- Region 'REG00001597'
Cis-regulatory Region
Name
REG.Cirobu.KH.S1404:3000-6298|Bra
Short name
Bra -3.3kb (Izzi 2013)
Region ID
REG00001597
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Stephanie A Izzi (2023-04-13)
Annotator
Marion Gueroult-Bellone (2023-04-13)
Curator
Marion Gueroult-Bellone (2023-04-13)
3,0006,297
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,000 / 6,297] on scaffold KhS1404
This large fragment (3.3kb) is located upstream of Ci-Bra TSS and is specifically active in the notochord.
Show sequence
Length: 3,298
AGCTTCTGAACAAGCCATGTGCCGGAGGCTAAATGAGGTAAGAGATTTTGCTTATAAGTT
GTTCGGTGGAGATTTAATATGAGATTAATGTTTAGGTTGGAGTGGCTGGGGACGAAATAA
TTGGTGGTGCATCGGTGAGTTGAAGCGCCCACGTGCGGTTCATGGGATTTAAGTTTTTTT
TGTTTTAGACTCACAGTTTATTCGAGAAATTGTCGAAAACTGAAGAGCGCGTGCGCAGTC
TGGAGAGGGAACTTGCGCAGTACCGTAGTGCGCATGCACGTGAAAGATGCGCACGAGAAC
GCCTTGAAGCAGAAAGAGAGAAAATGCAAAATATTCTTGGTCGTATTGAAACGTCTACGT
CATTCAATGATGACGTCATTGTTAGCAAACAAGTATGTATTGAAGTCATATGGTTATCGA
TTTGATGGCGCCTCTTTTTAAACTTTATTTTTTCAGACCGAAAAAAGTGAAACACACATG
ACGTCAGCAGTTGCTGACGTCAAACCATACGTCACACACCACGTGAATAAAACATCAATG
TCTCTCAAGCGAATAAATTCACCTCTGGATTTATCGGGTACGTAATGATGACGTAAATAA
ACGACATCGATGATGTAATATTGGTAACGATGACGTAACAATCTTTACAGTTGAGGCTAC
GTCATCGAAAAACCGGAAATCATCTTTCGACCAATCACGAGATACCACGTGGTCGGAAGA
TTTTTTAACAAATCGACGTCATAGCAACGTGACGTCACCACCAACGTTTCGAGTGATTCC
TATGACGTCACAAGAGGAAAAGCCGTCATCGCGATCTTCATGCTCCAGTGATTCAACCAC
CTCACGTGATTCCTATCGAGGTCGCTCTTTATCGCCGCCCCAGCGCTCATCTCATCTTGC
TTCTCATAGAAATACAATACAAGTTACGTGACTATCGTCGCCCAATGACAAACCGTAGTT
TCTTTTCCCGCCAAATTCAAAGATTTGTTCCAAACCAATCACACAACGCTACGTCATCGT
TTTTCTAATTTTCAAATAAAAACTTTTTTGCGATTTTAACAAAGACGTCTTCTTTGTTAC
AATGAGTCTTATTGTTACAAGTACCATCGAGTAACGACGATTGTTCCGTCATAACGAGCA
TAGTCAGCCGTTCAATATGAATGTAGCATCCTGTTGTGATGTTTATTGTACAAGTTGTAG
GATCTGGTATCTCAGTTTCCTGAGACCTGGTGATTCTGTTCCATTCAAGAAACCGAAACT
AATTCTACCGCTGGGTGTCGCTAAGATATTAATTGGTAATTAATGTTATTTATAATTAAT
TGGATCGTAATGAAAATGTTCGCAGCTACTGTGGTAATAATACTCGATTGTCTTGCATTG
TTTTGTCAAACAATGGGCATGACGTCGCCGCCGCCATCTTTCCTGGGAAGCCCGGGATTT
CCCCTCTGGATATCTTTGCTGGTAATCCCCCATTTAAGCGACGTTCCCGGTTTAACTTTC
TTTTTATTCCAGTTTATTTTCTCGGGTTGCTGCAACGTTGTGGCTTTTAAACGAAATTCG
AGATTCACGGTAAGTCCATGGTTTGTAAAAATTGTAACTATGACGTAACAAGCGAACTGT
TGCTAGACCGCCATCGCGTTCGGATCTTCTTGTCTTTCAACAATCGTGATTGTCGTTCTT
CTCTGTGTCGTCACAATGGCAGTAGCGGAAGAAGTAATTGTGTTAATGTTGTTATATTAT
GTCGTAACAAAGATATATTGTAGTTATCATTCTATCAATTGTCACATAAAGGCGTTGGTG
TCGTCATCTCTTCGATAATATGTTTGCTGGTACTTTCCCTTCTTGCTGTGACGTCATCAT
CATCGCTTCTTTGTTACGTAGCTCTGACGTCACACGACGATCGTTGGTTTACCGACAGGG
TAAGCCCCTTTTGTAGTTACGCTTAATCTAACATCGGTTCATGCAGGGAACACAATGCGA
CTCCACAGCGCCGTCTACCGGTGGCCACGAATGTGCCAGCCTAACTATTCCATCCAACAA
ACCAGCCTTCGTTTTCTACGCTCCTTCAGATGAAGCGGCGAAATATACGTCAGCGTTTCG
TGACGTCATTAGGGGACTGGAAACCAAAGGTTTGTGGTTTGAATATTATTCTTGTTTGGT
TAATATTCTTGTTTTTAGACAAACTCGACCGAGAGTTTGATGACGTCAAGACACCGGGTA
GGTTGATATTATGACGTCATTAATGCGTGGCGCCACAAAATTAGATATCTTTCTAGATTC
GAGCGAAGACGGGGTAGCAGTTATTGAAGTAGACGGACAACCCCTGCCGGGGAATTACCT
GCATAGTACTTAAGCTCTTATGACGTAATAATGGACCTTACAAAAGAACAAACAATTAAT
ATATAAGAATTCGGCTTATGACGAAATAATGTAAACGTCAAATTATTGTGACATTTATTA
TTGCGTCATTGAGGTTTTGTCGCCCACTCGCGAAACGTCAGGCAATTAGTTTCCTTGTTT
ACGGAACAAACGACTGCGGGGGTGCGAATTGTGACGTCATCAATCAAACTAAAAAGGGGA
GTTGTGACGCAATAATAAAGTAATTTTCAAATGCGATTGTTATGTAATAAAAAAGGAAAA
AATAATGAACATAATTATTCGTTTCTTCGACTGCGACAGCGAAGATAAAATTAATTAAAA
CAACAAAGAGAACGAAATTTGCAACAAGACGACAGTCGATAAAACACGATGAGTAGAAAC
TACTTGAGTAAAAGTGTCAAATAAAACAAAAAATGAAAAAAACACACCCAACGTACAATA
AAACTTACGGCAAATTGTAGTTAAAATTCATAATTACAAAACAATAAAGATCATATAAAC
AAAATATTAAAGATCATATTAACAATATAATATAGATCATATTAATAGCGACAAACCTTA
TCTGGTGTTACGTCACAATACAAACAAAATATTTCGACATGTCAATCAAAATCGGAAACC
AAGTTTCAACTTCCCACGCAAGACAATGGGAAAGTAACACGTCACAATACACTTGGTGAC
GTCATATCACTAAAACAAACACAAGGTGTTCGATCCAGCTGTGAAAGTAAACATAGAGCG
CCACCACACGAGCAACCCTCACAGCTGGATGCCACCACCTACGGCGCACTTTCAACAAAC
ATAAAATTTCAAAAAGAAGAAGTTATGACGTCACAATCCTGTATAAACTTGCACCCGAGT
GTGATTTGGAGGCAGAATGTTTTCGAAGCTCAGTGCGAGTTACAAACCTATAATGACG
