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  1. Pub 'PMID:15950616'

EST count

No result

RNA-Seq transcriptome profiles (by Experiment)

1 result

OVERVIEW

   Expression profile summary from all experiments in WT and mutant conditions:
FPKM & RPKM

Click here to see the RNA-Seq Pipeline Protocol.
You can show/hide lines in the charts by clicking on it in the legend part.
You can see more details by clicking on a point and then, on the link which will appear.

Be careful, FPKM & RPKM does not permit you to compare a gene across different conditions or experiments.

Download FPKM & RPKM data

OVERVIEW

   Expression profile summary from all experiments in WT and mutant conditions:
Relative Log Expression RLE

Be careful, RLE and 2RLE does not permit you to compare a gene across different experiments.

Download RLE Relative Log Expression data

RNA-Seq Experiment n°34136

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Oocytes of a single individual of Phallusia mammillata (Roscoff, France) were fertilized by a mixture of sperm of two individuals and development was followed microscopically. Embryos were snapfrozen in liquid nitrogen at the appropriate stage and kept at -80°C. Samples at stage 0, 8, 12, 15, 21, 26 were collected from the same fertilzation, while sample from stage 11 was independently collected from a different individual. Total RNA was prepared with the RNA II kit of Magerey Nagel and the quality was checked with the Bioanalyzer, all samples had a RIN value of higher than 9. Strand specific libraries were constructed and the sequencing (50PE) was performed with Illumina HiSeq 2000 technology (BGI, Hong Kong, China).

Assay platform Illumina HiSeq 2000
Layout Paired-end
Stranded Yes
Read length 49
Normalized data types
  • FPKM
  • RLE
Wild type - Replica 1
Territories whole embryo -
Biomaterial(s) P.mammillata, Stage 0 (Unfertilized egg)
P.mammillata, Stage 8 (64-cell)
P.mammillata, Stage 11 (early gastrula)
P.mammillata, Stage 12 (mid gastrula)
P.mammillata, Stage 15 (mid neurula)
P.mammillata, Stage 21 (mid tailbud I)
P.mammillata, Stage 26 (hatching larva)
Wild type - Replica 2
Territories whole embryo -
Biomaterial(s) P.mammillata, Stage 0 (Unfertilized egg)
P.mammillata, Stage 8 (64-cell)
P.mammillata, Stage 11 (early gastrula)
P.mammillata, Stage 12 (mid gastrula)
P.mammillata, Stage 15 (mid neurula)
P.mammillata, Stage 21 (mid tailbud I)
P.mammillata, Stage 26 (hatching larva)

In Situ Experiment Data

7 results

Experiment data ( results)

P.mammillata, Stage 4 (8-cell)

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Lateral view of a 8-cell stage embryo stained with Delta2 (AHC0AAA62YG24_RM1). No expression was observed.

Stained molecule Phmamm.CG.MTP2014.S355.g07721 (DLK2; DLL1)
Stained region(s) No expression -

P.mammillata, Stage 6a (early 32-cell)

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Animal view with anterior to the left of a 32-cell stage embryo stained with Delta2 (AHC0AAA62YG24_RM1). No expression was observed.

Stained molecule Phmamm.CG.MTP2014.S355.g07721 (DLK2; DLL1)
Stained region(s) No expression -

P.mammillata, Stage 8 (64-cell)

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Animal view with anterior to the left and lateral view of a 64-cell stage embryo stained with Delta2 (AHC0AAA62YG24_RM1). Expression was observed in the b7.9 and b7.10 cell pair as well as the A7.6 cell pair.

Stained molecule Phmamm.CG.MTP2014.S355.g07721 (DLK2; DLL1)
Stained region(s) A7.6 cell pair - b7.10 cell pair - b7.9 cell pair -

P.mammillata, Stage 10 (112-cell)

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Vegetal view with anterior to the left and lateral view with anterior to the left and animal to the top of a 112-cell stage embryo stained with Delta2 (AHC0AAA62YG24_RM1). Expression was observed in the b8.18, b8.20, A8.11 and A8.12 cell pairs.

Stained molecule Phmamm.CG.MTP2014.S355.g07721 (DLK2; DLL1)
Stained region(s) A8.11 cell pair - A8.12 cell pair - A8.15 cell pair - A8.16 cell pair - a8.25 cell pair - a8.26 cell pair - b8.18 cell pair - b8.20 cell pair -

P.mammillata, Stage 10 (112-cell)

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Animal view of a 10-stage embryo stained with Delta2 (AHC0AAA62YG24_RM1).

Original annotation: In Phallusia mammillata embryos, Delta2 is expressed in b6.5 derivatives

Stained molecule Phmamm.CG.MTP2014.S355.g07721 (DLK2; DLL1)
Stained region(s) b8.17 cell pair - b8.18 cell pair - b8.19 cell pair - b8.20 cell pair -

P.mammillata, Stage 10 (112-cell)

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Animal view of a 10-stage embryo stained with Delta2 (AHC0AAA62YG24_RM1) after U0126 treatment at the 8-cell stage. Expression was lost in the b8.17 and b8.18 cell pairs.

Stained molecule Phmamm.CG.MTP2014.S355.g07721 (DLK2; DLL1)
Stained region(s) No expression -

P.mammillata, Stage 10 (112-cell)

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Animal view of a 10-stage embryo stained with Delta2 (AHC0AAA62YG24_RM1) after SB431542 treatment (Nodal signaling pathway inhibitor). Expression was lost in the b8.17 and b8.18 cell pairs.

Stained molecule Phmamm.CG.MTP2014.S355.g07721 (DLK2; DLL1)
Stained region(s) No expression -