Aniseed - Gene card

Gene Card

Best human hits

CDX1; CDX2; CDX4

Species

B.leachii

Unique Gene ID

Boleac.g00000907

Gene Model ID

Boleac.CG.SB_v3.S109.g00907

Location

S109:144296..146768

Transcript Models and Sequences

Boleac.CG.SB_v3.S109.g00907.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_metazoa	PRINTS	Homeobox domain, metazoa
Homeobox_dom	CDD	Homeobox domain
Homeobox_dom	SMART	Homeobox domain
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox_dom	Pfam	Homeobox domain
Homeobox_dom	ProSiteProfiles	Homeobox domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
condensed nuclear chromosome	Hs	cellular component	124	3.57e-32
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	123	2.99e-32
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	127	6.11e-34
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	127	6.11e-34
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	123	2.99e-32
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	127	6.11e-34
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	124	3.57e-32
DNA binding	Hs	molecular function	127	6.11e-34
double-stranded DNA binding	Hs	molecular function	124	3.57e-32
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	127	6.11e-34
transcription corepressor activity	Hs	molecular function	124	3.57e-32
protein binding	Hs	molecular function	127	6.11e-34
nucleus	Hs	cellular component	127	6.11e-34
nucleoplasm	Hs	cellular component	124	3.57e-32
transcriptional repressor complex	Hs	cellular component	124	3.57e-32
sequence-specific DNA binding	Hs	molecular function	127	6.11e-34
transcription regulatory region DNA binding	Hs	molecular function	127	6.11e-34

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SUPERFAMILY	molecular function	2.65E-22
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function