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Gene Card

Best human hits

PABPC1; PABPC3; PABPC4

Species

B.schlosseri

Unique Gene ID

Boschl.g00058157

Gene Model ID

Boschl.CG.Botznik2013.chr9.g58157

Location

chr9:2073381..2075277

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chr9.g58157.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
PABP_HYD ProSiteProfiles Polyadenylate-binding protein/Hyperplastic disc protein
RRM_dom ProSiteProfiles RNA recognition motif domain
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom Pfam RNA recognition motif domain
PABP_HYD SMART Polyadenylate-binding protein/Hyperplastic disc protein
PABP-dom SUPERFAMILY PABC (PABP) domain
PABP_1234 TIGRFAM Polyadenylate binding protein, human types 1, 2, 3, 4
RRM_dom_euk SMART RNA recognition motif domain, eukaryote
PABP_HYD Pfam Polyadenylate-binding protein/Hyperplastic disc protein
RRM_dom SMART RNA recognition motif domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

45 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
focal adhesion Hs cellular component
mRNA polyadenylation Hs biological process
RNA processing Hs biological process
mRNA processing Hs biological process
RNA catabolic process Hs biological process
translation Hs biological process
translational initiation Hs biological process
blood coagulation Hs biological process
protein C-terminus binding Hs molecular function
poly(A) binding Hs molecular function
poly(U) RNA binding Hs molecular function
RNA splicing Hs biological process
translation activator activity Hs molecular function
cytoplasmic stress granule Hs cellular component
membrane Hs cellular component
mRNA metabolic process Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
gene silencing by RNA Hs biological process
cytoplasmic ribonucleoprotein granule Hs cellular component
regulation of mRNA stability Hs biological process
positive regulation of translation Hs biological process
mRNA stabilization Hs biological process
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
extracellular exosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Hs biological process
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
oocyte maturation Hs biological process
mitochondrion Hs cellular component
mitochondrial matrix Hs cellular component
chromatin remodeling Hs biological process
chromatin-mediated maintenance of transcription Hs biological process
nucleus localization Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 794 0.0
RNA binding Hs molecular function 794 0.0
mRNA binding Hs molecular function 764 0.0
mRNA 3'-UTR binding Hs molecular function 794 0.0
protein binding Hs molecular function 794 0.0
nucleus Hs cellular component 794 0.0
spliceosomal complex Hs cellular component 794 0.0
cytoplasm Hs cellular component 794 0.0
cytosol Hs cellular component 794 0.0
focal adhesion Hs cellular component 794 0.0
protein C-terminus binding Hs molecular function 794 0.0
poly(A) binding Hs molecular function 794 0.0
poly(U) RNA binding Hs molecular function 794 0.0
translation activator activity Hs molecular function 794 0.0
cytoplasmic stress granule Hs cellular component 794 0.0
membrane Hs cellular component 794 0.0
intracellular ribonucleoprotein complex Hs cellular component 794 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 794 0.0
extracellular exosome Hs cellular component 794 0.0
catalytic step 2 spliceosome Hs cellular component 794 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 4.89E-49
RNA binding TIGRFAM molecular function 3.5E-230

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