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GENE CARD

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Gene Card

Best human hits

PDCD6IP; PTPN23; RHPN1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000004

Gene Model ID

KH2012:KH.C1.1000

Location

KhC1:786652..800436

Transcript Models and Sequences

  KH2012:KH.C1.1000.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000002054
NCBI Reference Sequence XM_002123841.3
Collections

Gateway full ORF

2 results

cima8106382

Plate: VES73_F16

cien205484

Plate: VES102_O05

Gene collection 1 (N. Satoh)

2 results

ciad005h18

Plate: R1CiGC01b03

ciad005k09

Plate: R1CiGC01d03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
BRO1_sf Gene3D BRO1 domain superfamily
BRO1_dom SMART BRO1 domain
BRO1_dom ProSiteProfiles BRO1 domain
ALIX_V_dom Pfam ALIX V-shaped domain
BRO1_dom Pfam BRO1 domain

GOSlim

44 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
extracellular region Orthology cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
endosome Blast cellular component
early endosome Blast cellular component
microtubule organizing center Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
focal adhesion Orthology cellular component
protein dephosphorylation Blast biological process
apoptotic process Orthology biological process
cell cycle Orthology biological process
protein transport Orthology biological process
membrane Orthology cellular component
dephosphorylation Blast biological process
nuclear body Blast cellular component
hydrolase activity Blast molecular function
protein kinase binding Blast molecular function
cell junction Orthology cellular component
cytoplasmic vesicle Blast cellular component
melanosome Orthology cellular component
protein homodimerization activity Orthology molecular function
cell projection Blast cellular component
myelin sheath Orthology cellular component
protein dimerization activity Orthology molecular function
protein homooligomerization Orthology biological process
cell division Orthology biological process
extracellular exosome Orthology cellular component
extracellular vesicle Orthology cellular component
membrane organization Orthology biological process
organelle organization Orthology biological process
plasma membrane part Orthology cellular component
microtubule-based process Orthology biological process
receptor binding Orthology molecular function
cytoskeletal part Orthology cellular component
cellular process Orthology biological process
endoplasmic reticulum part Orthology cellular component
midbody Orthology cellular component
organelle Blast cellular component
plasma membrane region Blast cellular component
macromolecular complex Blast cellular component
cell projection part Blast cellular component

GO (Orthology)

35 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mitotic cytokinesis Hs biological process
actomyosin contractile ring assembly Hs biological process
cell separation after cytokinesis Hs biological process
immunological synapse Hs cellular component
protein binding Hs molecular function
extracellular region Hs cellular component
cytoplasm Hs cellular component
microtubule organizing center Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
bicellular tight junction Hs cellular component
focal adhesion Hs cellular component
apoptotic process Hs biological process
cell cycle Hs biological process
regulation of centrosome duplication Hs biological process
protein transport Hs biological process
membrane Hs cellular component
viral process Hs biological process
cell junction Hs cellular component
proteinase activated receptor binding Hs molecular function
multivesicular body assembly Hs biological process
melanosome Hs cellular component
actomyosin Hs cellular component
protein homodimerization activity Hs molecular function
myelin sheath Hs cellular component
maintenance of epithelial cell apical/basal polarity Hs biological process
protein dimerization activity Hs molecular function
calcium-dependent protein binding Hs molecular function
protein homooligomerization Hs biological process
cell division Hs biological process
extracellular exosome Hs cellular component
bicellular tight junction assembly Hs biological process
endoplasmic reticulum exit site Hs cellular component
Flemming body Hs cellular component
extracellular vesicle Hs cellular component

GO (Blast)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
immunological synapse Hs cellular component 589 0.0
phosphoprotein phosphatase activity Hs molecular function 219 8.84e-59
protein tyrosine phosphatase activity Hs molecular function 219 8.84e-59
protein binding Hs molecular function 589 0.0
extracellular region Hs cellular component 589 0.0
nucleus Hs cellular component 219 8.84e-59
nucleoplasm Hs cellular component 219 8.84e-59
cytoplasm Hs cellular component 589 0.0
endosome Hs cellular component 219 8.84e-59
early endosome Hs cellular component 219 8.84e-59
microtubule organizing center Hs cellular component 589 0.0
cytosol Hs cellular component 589 0.0
cytoskeleton Hs cellular component 589 0.0
bicellular tight junction Hs cellular component 589 0.0
focal adhesion Hs cellular component 589 0.0
cilium Hs cellular component 219 8.84e-59
membrane Hs cellular component 589 0.0
nuclear body Hs cellular component 219 8.84e-59
hydrolase activity Hs molecular function 219 8.84e-59
phosphatase activity Hs molecular function 219 8.84e-59
protein kinase binding Hs molecular function 219 8.84e-59
cell junction Hs cellular component 589 0.0
cytoplasmic vesicle Hs cellular component 219 8.84e-59
proteinase activated receptor binding Hs molecular function 589 0.0
ciliary basal body Hs cellular component 219 8.84e-59
melanosome Hs cellular component 589 0.0
actomyosin Hs cellular component 589 0.0
protein homodimerization activity Hs molecular function 589 0.0
cell projection Hs cellular component 219 8.84e-59
myelin sheath Hs cellular component 589 0.0
protein dimerization activity Hs molecular function 589 0.0
calcium-dependent protein binding Hs molecular function 589 0.0
extracellular exosome Hs cellular component 589 0.0
endoplasmic reticulum exit site Hs cellular component 589 0.0
Flemming body Hs cellular component 589 0.0
extracellular vesicle Hs cellular component 589 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Pfam molecular function 3.3E-97

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