Aniseed - Gene card

Gene Card

Best human hits

UBE2D2; UBE2F; UBE2M

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000005

Gene Model ID

KH2012:KH.C1.1001

Location

KhC1:7800473..7803523

Transcript Models and Sequences

KH2012:KH.C1.1001.v1.A.nonSL10-1
KH2012:KH.C1.1001.v1.A.nonSL1-1
KH2012:KH.C1.1001.v1.A.nonSL11-1
KH2012:KH.C1.1001.v1.A.nonSL13-1
KH2012:KH.C1.1001.v1.A.nonSL14-1
KH2012:KH.C1.1001.v1.A.nonSL15-1
KH2012:KH.C1.1001.v1.A.nonSL2-1
KH2012:KH.C1.1001.v1.A.nonSL3-1
KH2012:KH.C1.1001.v1.A.nonSL4-1
KH2012:KH.C1.1001.v1.A.nonSL5-1
KH2012:KH.C1.1001.v1.A.nonSL6-1
KH2012:KH.C1.1001.v1.A.nonSL7-1
KH2012:KH.C1.1001.v1.A.nonSL8-1
KH2012:KH.C1.1001.v1.A.nonSL9-1
KH2012:KH.C1.1001.v1.A.SL12-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000007561

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cicl006e14

Plate: R1CiGC08p18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
UBQ-conjugat_E2	CDD	Ubiquitin-conjugating enzyme E2
UBQ-conjugat_E2	ProSiteProfiles	Ubiquitin-conjugating enzyme E2
UBQ-conjugating_enzyme/RWD	Gene3D	Ubiquitin-conjugating enzyme/RWD-like
UBQ-conjugat_E2	Pfam	Ubiquitin-conjugating enzyme E2
UBQ-conjugating_enzyme/RWD	SUPERFAMILY	Ubiquitin-conjugating enzyme/RWD-like
UBQ-conjugating_AS	ProSitePatterns	Ubiquitin-conjugating enzyme, active site

GOSlim

21 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cellular protein modification process	Orthology	biological process
protein ubiquitination	Orthology	biological process
transferase activity	Orthology	molecular function
ubiquitin protein ligase binding	Blast	molecular function
macromolecular complex	Blast	cellular component
extracellular exosome	Orthology	cellular component
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
ubiquitin-like protein transferase activity	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
intracellular signal transduction	Orthology	biological process
positive regulation of apoptotic process	Orthology	biological process
protein modification by small protein conjugation	Orthology	biological process
intracellular part	Blast	cellular component

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cellular protein modification process	Hs	biological process
transforming growth factor beta receptor signaling pathway	Hs	biological process
protein ubiquitination	Hs	biological process
transferase activity	Hs	molecular function
NEDD8 transferase activity	Hs	molecular function
NIK/NF-kappaB signaling	Hs	biological process
positive regulation of neuron apoptotic process	Hs	biological process
post-translational protein modification	Hs	biological process
protein neddylation	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin ligase complex	Hs	cellular component	97.4	3.13e-26
nucleotide binding	Hs	molecular function	295	1.01e-103
ubiquitin-protein transferase activity	Hs	molecular function	295	1.01e-103
protein binding	Hs	molecular function	295	1.01e-103
ATP binding	Hs	molecular function	295	1.01e-103
nucleoplasm	Hs	cellular component	295	1.01e-103
cytoplasm	Hs	cellular component	295	1.01e-103
cytosol	Hs	cellular component	295	1.01e-103
transferase activity	Hs	molecular function	295	1.01e-103
NEDD8 transferase activity	Hs	molecular function	295	1.01e-103
ubiquitin protein ligase binding	Hs	molecular function	119	2.41e-34
macromolecular complex	Hs	cellular component	97.4	3.13e-26
ubiquitin protein ligase activity	Hs	molecular function	119	2.41e-34
ubiquitin conjugating enzyme activity	Hs	molecular function	97.4	3.13e-26
extracellular exosome	Hs	cellular component	295	1.01e-103

GO (InterProScan)