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Gene Card

Best human hits

RAB1A; RAB1B; RAB35

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000016

Gene Model ID

KH2012:KH.C1.1011

Location

KhC1:336404..342343

Transcript Models and Sequences

  KH2012:KH.C1.1011.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000016136
NCBI Reference Sequence XM_009863822.2
Collections

Gateway full ORF

2 results

cima857958

Plate: VES64_C05

cima8102792

Plate: VES73_I11

Gene collection 1 (N. Satoh)

1 result

cieg014j24

Plate: R1CiGC17j23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Small_GTPase Pfam Small GTPase superfamily
Small_GTP-bd_dom TIGRFAM Small GTP-binding protein domain

GOSlim

42 results

GO Term Annotation Origin Type
Golgi membrane Blast cellular component
nucleotide binding Orthology molecular function
GTPase activity Orthology molecular function
protein binding Orthology molecular function
GTP binding Orthology molecular function
cytoplasm Blast cellular component
mitochondrion Orthology cellular component
endosome Orthology cellular component
early endosome Blast cellular component
endoplasmic reticulum Blast cellular component
endoplasmic reticulum membrane Blast cellular component
Golgi apparatus Blast cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
protein localization Orthology biological process
protein transport Orthology biological process
membrane Orthology cellular component
neuron projection development Orthology biological process
cell projection membrane Orthology cellular component
cytoplasmic vesicle Orthology cellular component
melanosome Orthology cellular component
extracellular exosome Orthology cellular component
membrane organization Orthology biological process
cell division Orthology biological process
anion binding Orthology molecular function
membrane part Orthology cellular component
endomembrane system Orthology cellular component
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
intracellular transport Orthology biological process
guanyl ribonucleotide binding Orthology molecular function
purine ribonucleoside binding Orthology molecular function
immune system process Orthology biological process
protein localization to organelle Orthology biological process
extracellular region part Orthology cellular component
synapse part Orthology cellular component
intrinsic component of membrane Orthology cellular component
neuron part Orthology cellular component
cytoplasmic part Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
cell adhesion molecule binding Blast molecular function

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
mitotic cytokinesis Hs biological process
GTPase activity Hs molecular function
protein binding Hs molecular function
GTP binding Hs molecular function
phosphatidylinositol-4,5-bisphosphate binding Hs molecular function
mitochondrion Hs cellular component
endosome Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
clathrin-coated pit Hs cellular component
protein localization Hs biological process
endosome membrane Hs cellular component
protein transport Hs biological process
membrane Hs cellular component
endosomal transport Hs biological process
GDP binding Hs molecular function
antigen processing and presentation Hs biological process
clathrin-coated vesicle Hs cellular component
clathrin-coated vesicle membrane Hs cellular component
neuron projection development Hs biological process
cell projection membrane Hs cellular component
cytoplasmic vesicle Hs cellular component
endocytic recycling Hs biological process
protein localization to endosome Hs biological process
melanosome Hs cellular component
intercellular bridge Hs cellular component
clathrin-coated endocytic vesicle Hs cellular component
plasma membrane to endosome transport Hs biological process
recycling endosome membrane Hs cellular component
extracellular exosome Hs cellular component
anchored component of synaptic vesicle membrane Hs cellular component

GO (Blast)

35 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 234 5.36e-79
nucleotide binding Hs molecular function 300 5.31e-105
GTPase activity Hs molecular function 300 5.31e-105
protein binding Hs molecular function 300 5.31e-105
GTP binding Hs molecular function 300 5.31e-105
phosphatidylinositol-4,5-bisphosphate binding Hs molecular function 300 5.31e-105
cytoplasm Hs cellular component 234 5.36e-79
mitochondrion Hs cellular component 300 5.31e-105
endosome Hs cellular component 300 5.31e-105
early endosome Hs cellular component 228 1.51e-76
endoplasmic reticulum Hs cellular component 228 1.51e-76
endoplasmic reticulum membrane Hs cellular component 234 5.36e-79
endoplasmic reticulum-Golgi intermediate compartment Hs cellular component 234 5.36e-79
Golgi apparatus Hs cellular component 234 5.36e-79
cytosol Hs cellular component 300 5.31e-105
plasma membrane Hs cellular component 300 5.31e-105
clathrin-coated pit Hs cellular component 300 5.31e-105
endosome membrane Hs cellular component 300 5.31e-105
membrane Hs cellular component 300 5.31e-105
GDP binding Hs molecular function 300 5.31e-105
transport vesicle Hs cellular component 234 5.36e-79
clathrin-coated vesicle Hs cellular component 300 5.31e-105
transport vesicle membrane Hs cellular component 228 1.51e-76
clathrin-coated vesicle membrane Hs cellular component 300 5.31e-105
cell projection membrane Hs cellular component 300 5.31e-105
cytoplasmic vesicle Hs cellular component 300 5.31e-105
endoplasmic reticulum-Golgi intermediate compartment membrane Hs cellular component 234 5.36e-79
pre-autophagosomal structure membrane Hs cellular component 234 5.36e-79
melanosome Hs cellular component 300 5.31e-105
intercellular bridge Hs cellular component 300 5.31e-105
cadherin binding Hs molecular function 228 1.51e-76
clathrin-coated endocytic vesicle Hs cellular component 300 5.31e-105
recycling endosome membrane Hs cellular component 300 5.31e-105
extracellular exosome Hs cellular component 300 5.31e-105
anchored component of synaptic vesicle membrane Hs cellular component 300 5.31e-105

GO (InterProScan)

2 results

GO Term Analysis Type e-value
GTPase activity Pfam molecular function 1.9E-61
GTP binding Pfam molecular function 1.9E-61

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