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Gene Card

Best human hits

NR5A1; NR6A1; RXRG

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000021

Gene Model ID

KH2012:KH.C1.1016

Location

KhC1:4692775..4714088

Transcript Models and Sequences

  KH2012:KH.C1.1016.v1.A.SL3-1
KH2012:KH.C1.1016.v2.A.SL2-1
KH2012:KH.C1.1016.v3.A.SL2-2
KH2012:KH.C1.1016.v4.A.SL1-1

External Database Gene Card

External database links

6 results

Database Gene ID
ENSEMBL ENSCING00000005163
ENSEMBL ENSCING00000018236
NCBI Reference Sequence NM_001078472.1
NCBI Reference Sequence XM_018816114.1
NCBI Reference Sequence XM_018816133.1
NCBI Reference Sequence XM_018816158.1
Collections

Gateway full ORF

2 results

cien101637

Plate: VES86_L03

cien175420

Plate: VES97_L09

Gene collection 1 (N. Satoh)

2 results

citb011e18

Plate: R1CiGC30a12

cign062a04

Plate: R1CiGC42d10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
Znf_hrmn_rcpt ProSiteProfiles Zinc finger, nuclear hormone receptor-type
Nucl_hrmn_rcpt_lig-bd Pfam Nuclear hormone receptor, ligand-binding domain
Znf_hrmn_rcpt Pfam Zinc finger, nuclear hormone receptor-type
NHR_like_dom_sf SUPERFAMILY Nuclear hormone receptor-like domain superfamily
Nucl_hrmn_rcpt_lig-bd SMART Nuclear hormone receptor, ligand-binding domain
Znf_NHR/GATA Gene3D Zinc finger, NHR/GATA-type
Znf_hrmn_rcpt SMART Zinc finger, nuclear hormone receptor-type
Nuclear_hrmn_rcpt PRINTS Nuclear hormone receptor
Znf_hrmn_rcpt PRINTS Zinc finger, nuclear hormone receptor-type
Znf_hrmn_rcpt ProSitePatterns Zinc finger, nuclear hormone receptor-type

GOSlim

34 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Blast molecular function
double-stranded DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Blast molecular function
protein binding Blast molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
gamete generation Orthology biological process
spermatogenesis Orthology biological process
zinc ion binding Orthology molecular function
cell proliferation Orthology biological process
enzyme binding Blast molecular function
protein homodimerization activity Orthology molecular function
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
signal transduction Orthology biological process
response to lipid Orthology biological process
signaling receptor activity Orthology molecular function
cellular response to organic substance Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
anion binding Blast molecular function
binding Blast molecular function
nuclear part Blast cellular component

GO (Orthology)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
steroid hormone receptor activity Hs molecular function
nuclear receptor activity Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
gamete generation Hs biological process
spermatogenesis Hs biological process
zinc ion binding Hs molecular function
cell proliferation Hs biological process
intracellular steroid hormone receptor signaling pathway Hs biological process
protein homodimerization activity Hs molecular function
steroid hormone mediated signaling pathway Hs biological process
sequence-specific DNA binding Hs molecular function
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 131 1.25e-32
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 479 6.67e-164
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 131 1.25e-32
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 479 6.67e-164
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 479 6.67e-164
DNA binding Hs molecular function 479 6.67e-164
chromatin binding Hs molecular function 131 1.25e-32
double-stranded DNA binding Hs molecular function 131 1.25e-32
transcription factor activity, sequence-specific DNA binding Hs molecular function 479 6.67e-164
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 131 1.25e-32
steroid hormone receptor activity Hs molecular function 479 6.67e-164
transcription coactivator activity Hs molecular function 131 1.25e-32
nuclear receptor activity Hs molecular function 479 6.67e-164
9-cis retinoic acid receptor activity Hs molecular function 123 7.85e-30
protein binding Hs molecular function 131 1.25e-32
phospholipid binding Hs molecular function 131 1.25e-32
nucleus Hs cellular component 479 6.67e-164
nucleoplasm Hs cellular component 479 6.67e-164
transcription factor complex Hs cellular component 479 6.67e-164
zinc ion binding Hs molecular function 479 6.67e-164
lipid binding Hs molecular function 131 1.25e-32
enzyme binding Hs molecular function 131 1.25e-32
protein homodimerization activity Hs molecular function 479 6.67e-164
sequence-specific DNA binding Hs molecular function 479 6.67e-164
metal ion binding Hs molecular function 479 6.67e-164
RNA polymerase II transcription factor complex Hs cellular component 131 1.25e-32

GO (InterProScan)

7 results

GO Term Analysis Type e-value
DNA binding PRINTS molecular function 5.0E-16
transcription factor activity, sequence-specific DNA binding SMART molecular function 4.5E-34
nucleus SMART cellular component 4.5E-34
regulation of transcription, DNA-templated SMART biological process 4.5E-34
zinc ion binding SMART molecular function 4.5E-34
steroid hormone mediated signaling pathway SMART biological process 8.8E-23
sequence-specific DNA binding SMART molecular function 4.5E-34

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