Aniseed - Gene card

Gene Card

Best human hits

PFDN5; UXT

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000038

Gene Model ID

KH2012:KH.C1.1031

Location

KhC1:6131762..6132870

Transcript Models and Sequences

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000012729

Collections

Gene collection 1 (N. Satoh)

1 result

cieg023c21

Plate: R1CiGC19k21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
UXT	PRINTS	Ubiquitously expressed transcript protein UXT
Prefoldin_subunit_alpha	Pfam	Prefoldin alpha-like
Prefoldin	Gene3D	Prefoldin

GOSlim

24 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
chromatin binding	Orthology	molecular function
transcription corepressor activity	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
centrosome	Orthology	cellular component
microtubule organizing center	Orthology	cellular component
cytoskeleton	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
apoptotic process	Orthology	biological process
microtubule binding	Orthology	molecular function
unfolded protein binding	Blast	molecular function
microtubule-based process	Orthology	biological process
organelle organization	Orthology	biological process
cytoskeletal part	Orthology	cellular component
microtubule cytoskeleton	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
microtubule-based movement	Orthology	biological process
intracellular transport	Orthology	biological process
tubulin binding	Orthology	molecular function

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
microtubule cytoskeleton organization	Hs	biological process
spindle pole	Hs	cellular component
gamma-tubulin complex	Hs	cellular component
RNA polymerase II transcription corepressor activity	Hs	molecular function
chromatin binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
centrosome	Hs	cellular component
microtubule organizing center	Hs	cellular component
cytoskeleton	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
apoptotic process	Hs	biological process
centrosome cycle	Hs	biological process
microtubule binding	Hs	molecular function
mitochondrion transport along microtubule	Hs	biological process
beta-tubulin binding	Hs	molecular function

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
spindle pole	Hs	cellular component	130	1.51e-39
gamma-tubulin complex	Hs	cellular component	130	1.51e-39
RNA polymerase II transcription corepressor activity	Hs	molecular function	130	1.51e-39
chromatin binding	Hs	molecular function	130	1.51e-39
transcription corepressor activity	Hs	molecular function	37.4	8.02e-04
protein binding	Hs	molecular function	130	1.51e-39
nucleus	Hs	cellular component	130	1.51e-39
nucleoplasm	Hs	cellular component	130	1.51e-39
cytoplasm	Hs	cellular component	130	1.51e-39
centrosome	Hs	cellular component	130	1.51e-39
microtubule organizing center	Hs	cellular component	130	1.51e-39
cytoskeleton	Hs	cellular component	130	1.51e-39
microtubule binding	Hs	molecular function	130	1.51e-39
prefoldin complex	Hs	cellular component	37.4	8.02e-04
beta-tubulin binding	Hs	molecular function	130	1.51e-39
unfolded protein binding	Hs	molecular function	37.4	8.02e-04

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
negative regulation of transcription from RNA polymerase II promoter	PRINTS	biological process	2.5E-14
RNA polymerase II transcription corepressor activity	PRINTS	molecular function	2.5E-14