Login
Help

GENE CARD

Submit your Data

  1. > 

Gene Card

Best human hits

NUP98

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000067

Gene Model ID

KH2012:KH.C1.1058

Location

KhC1:5540597..5544799

Transcript Models and Sequences

  KH2012:KH.C1.1058.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
NCBI Reference Sequence XM_002121636.3
NCBI Reference Sequence XM_018813324.1
Collections

Gateway full ORF

2 results

cien37693

Plate: VES76_I08

cien136101

Plate: VES91_C15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

1 result

IPR Term Analysis Definition

GOSlim

22 results

GO Term Annotation Origin Type
RNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nuclear envelope Blast cellular component
nucleoplasm Blast cellular component
cytosol Blast cellular component
peptidase activity Blast molecular function
serine-type peptidase activity Blast molecular function
membrane Blast cellular component
nuclear body Blast cellular component
hydrolase activity Blast molecular function
nuclear membrane Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
macromolecular complex Blast cellular component
binding Blast molecular function
structural molecule activity Blast molecular function
intracellular transport Blast biological process
nuclear lumen Blast cellular component
nuclear part Blast cellular component
chromatin binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
kinetochore Hs cellular component 41.6 0.002
RNA polymerase II transcription coactivator activity Hs molecular function 41.6 0.002
RNA binding Hs molecular function 41.6 0.002
mRNA binding Hs molecular function 41.6 0.002
transporter activity Hs molecular function 41.6 0.002
protein binding Hs molecular function 41.6 0.002
nucleus Hs cellular component 41.6 0.002
nuclear envelope Hs cellular component 41.6 0.002
nuclear pore Hs cellular component 41.6 0.002
nucleoplasm Hs cellular component 41.6 0.002
cytosol Hs cellular component 41.6 0.002
nuclear localization sequence binding Hs molecular function 41.6 0.002
peptidase activity Hs molecular function 41.6 0.002
serine-type peptidase activity Hs molecular function 41.6 0.002
membrane Hs cellular component 41.6 0.002
nuclear body Hs cellular component 41.6 0.002
hydrolase activity Hs molecular function 41.6 0.002
structural constituent of nuclear pore Hs molecular function 41.6 0.002
intracellular ribonucleoprotein complex Hs cellular component 41.6 0.002
nuclear pore outer ring Hs cellular component 41.6 0.002
nuclear membrane Hs cellular component 41.6 0.002
nuclear periphery Hs cellular component 41.6 0.002
peptide binding Hs molecular function 41.6 0.002
nuclear inclusion body Hs cellular component 41.6 0.002
intracellular membrane-bounded organelle Hs cellular component 41.6 0.002
host cell Hs cellular component 41.6 0.002
nuclear pore cytoplasmic filaments Hs cellular component 41.6 0.002
nuclear pore nuclear basket Hs cellular component 41.6 0.002
promoter-specific chromatin binding Hs molecular function 41.6 0.002

GO (InterProScan)

No result

GO Term Analysis Type e-value

Back to Top