Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000024053
NCBI Reference Sequence	XM_002132030.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb011p16

Plate: R1CiGC30g08

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold
Rrp44_CSD1	Pfam	Rrp44-like cold shock domain
PIN-like_dom_sf	SUPERFAMILY	PIN-like domain superfamily
RRP44_S1	Pfam	Exosome complex exonuclease RRP44, S1 domain
RNase_II/R_CS	ProSitePatterns	Ribonuclease II/R, conserved site

GOSlim

25 results

GO Term	Annotation Origin	Type
magnesium ion binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
centrosome	Blast	cellular component
cytosol	Orthology	cellular component
plasma membrane	Blast	cellular component
membrane	Orthology	cellular component
hydrolase activity	Orthology	molecular function
enzyme binding	Orthology	molecular function
metal ion binding	Blast	molecular function
regulation of molecular function	Orthology	biological process
RNA metabolic process	Orthology	biological process
nuclear lumen	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular part	Orthology	cellular component
molecular function regulator	Orthology	molecular function
RNA processing	Orthology	biological process
RNA catabolic process	Orthology	biological process
mRNA catabolic process	Orthology	biological process
nuclear-transcribed mRNA catabolic process	Orthology	biological process
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
3'-5'-exoribonuclease activity	Hs	molecular function
nuclear exosome (RNase complex)	Hs	cellular component
exosome (RNase complex)	Hs	cellular component
RNA binding	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
exonuclease activity	Hs	molecular function
guanyl-nucleotide exchange factor activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
rRNA processing	Hs	biological process
membrane	Hs	cellular component
rRNA catabolic process	Hs	biological process
hydrolase activity	Hs	molecular function
regulation of mRNA stability	Hs	biological process
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	Hs	biological process
regulation of molecular function	Hs	biological process
CUT catabolic process	Hs	biological process
nucleic acid phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis, exonucleolytic	Hs	biological process

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
3'-5'-exoribonuclease activity	Hs	molecular function	1052	0.0
nuclear exosome (RNase complex)	Hs	cellular component	1052	0.0
cytoplasmic exosome (RNase complex)	Hs	cellular component	479	6.69e-154
exosome (RNase complex)	Hs	cellular component	1052	0.0
magnesium ion binding	Hs	molecular function	326	8.36e-98
P-body	Hs	cellular component	326	8.36e-98
RNA binding	Hs	molecular function	1052	0.0
nuclease activity	Hs	molecular function	1052	0.0
endonuclease activity	Hs	molecular function	1052	0.0
exonuclease activity	Hs	molecular function	1052	0.0
ribonuclease activity	Hs	molecular function	326	8.36e-98
guanyl-nucleotide exchange factor activity	Hs	molecular function	1052	0.0
protein binding	Hs	molecular function	1052	0.0
nucleus	Hs	cellular component	1052	0.0
nucleoplasm	Hs	cellular component	1052	0.0
cytoplasm	Hs	cellular component	1052	0.0
centrosome	Hs	cellular component	479	6.69e-154
cytosol	Hs	cellular component	1052	0.0
polysome	Hs	cellular component	326	8.36e-98
plasma membrane	Hs	cellular component	479	6.69e-154
poly(U) RNA binding	Hs	molecular function	326	8.36e-98
membrane	Hs	cellular component	1052	0.0
hydrolase activity	Hs	molecular function	1052	0.0
enzyme binding	Hs	molecular function	479	6.69e-154
metal ion binding	Hs	molecular function	326	8.36e-98

GO (InterProScan)

No result

GO Term	Analysis	Type	e-value

Gene Card

Best human hits

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Unique Gene ID

Gene Model ID

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Transcript Models and Sequences