Aniseed - Gene card

Gene Card

Best human hits

HNRNPA1; HNRNPA1L2; HNRNPA3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000113

Gene Model ID

KH2012:KH.C1.11

Location

KhC1:4601056..4622714

Transcript Models and Sequences

KH2012:KH.C1.11.v1.A.nonSL2-5
KH2012:KH.C1.11.v1.A.SL1-5
KH2012:KH.C1.11.v2.A.nonSL2-3
KH2012:KH.C1.11.v2.A.SL1-3
KH2012:KH.C1.11.v3.A.nonSL2-4
KH2012:KH.C1.11.v3.A.SL1-4
KH2012:KH.C1.11.v4.A.nonSL2-1
KH2012:KH.C1.11.v4.A.SL1-1
KH2012:KH.C1.11.v5.A.nonSL2-2
KH2012:KH.C1.11.v5.A.SL1-2

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

2 results

cilv013b16

Plate: R1CiGC26e09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain

GOSlim

43 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
membrane	Orthology	cellular component
RNA metabolic process	Orthology	biological process
neuron projection	Orthology	cellular component
extracellular exosome	Orthology	cellular component
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
extracellular region	Orthology	cellular component
protein kinase binding	Orthology	molecular function
response to lipopolysaccharide	Orthology	biological process
regulation of gene expression	Orthology	biological process
DNA binding	Orthology	molecular function
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organic substance transport	Orthology	biological process
intracellular transport	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
organelle organization	Orthology	biological process
DNA metabolic process	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
cell communication	Orthology	biological process
cellular response to stress	Orthology	biological process
transmembrane transport	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
intracellular organelle part	Orthology	cellular component
intracellular protein transport	Orthology	biological process
gene expression	Orthology	biological process
defense response	Orthology	biological process
nuclear body	Orthology	cellular component
nuclear lumen	Orthology	cellular component
RNA processing	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
mRNA catabolic process	Orthology	biological process
positive regulation of gene expression	Orthology	biological process

GO (Orthology)

56 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
regulation of alternative mRNA splicing, via spliceosome	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
single-stranded RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
cytoplasm	Hs	cellular component
mRNA processing	Hs	biological process
RNA export from nucleus	Hs	biological process
RNA splicing	Hs	biological process
fibroblast growth factor receptor signaling pathway	Hs	biological process
membrane	Hs	cellular component
viral process	Hs	biological process
RNA metabolic process	Hs	biological process
protein domain specific binding	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
negative regulation of telomere maintenance via telomerase	Hs	biological process
positive regulation of telomere maintenance via telomerase	Hs	biological process
miRNA binding	Hs	molecular function
ribonucleoprotein granule	Hs	cellular component
pre-mRNA binding	Hs	molecular function
cellular response to glucose starvation	Hs	biological process
neuron projection	Hs	cellular component
mRNA transport	Hs	biological process
RNA transmembrane transporter activity	Hs	molecular function
nuclear export	Hs	biological process
nuclear import	Hs	biological process
telomeric repeat-containing RNA binding	Hs	molecular function
extracellular exosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component
G-rich strand telomeric DNA binding	Hs	molecular function
messenger ribonucleoprotein complex	Hs	cellular component
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
chromosome, telomeric region	Hs	cellular component
mRNA 3'-UTR binding	Hs	molecular function
extracellular region	Hs	cellular component
mRNA export from nucleus	Hs	biological process
inflammatory response	Hs	biological process
Cajal body	Hs	cellular component
nuclear matrix	Hs	cellular component
AU-rich element binding	Hs	molecular function
protein kinase binding	Hs	molecular function
primary miRNA processing	Hs	biological process
response to lipopolysaccharide	Hs	biological process
single-stranded telomeric DNA binding	Hs	molecular function
G-quadruplex DNA unwinding	Hs	biological process
negative regulation of mRNA splicing, via spliceosome	Hs	biological process
RNA transport	Hs	biological process
3'-UTR-mediated mRNA stabilization	Hs	biological process
pre-mRNA intronic binding	Hs	molecular function
N6-methyladenosine-containing RNA binding	Hs	molecular function

GO (Blast)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	273	1.72e-88
single-stranded DNA binding	Hs	molecular function	273	1.72e-88
RNA binding	Hs	molecular function	273	1.72e-88
single-stranded RNA binding	Hs	molecular function	273	1.72e-88
mRNA binding	Hs	molecular function	270	3.88e-87
protein binding	Hs	molecular function	273	1.72e-88
nucleus	Hs	cellular component	273	1.72e-88
nucleoplasm	Hs	cellular component	273	1.72e-88
spliceosomal complex	Hs	cellular component	273	1.72e-88
cytoplasm	Hs	cellular component	273	1.72e-88
membrane	Hs	cellular component	273	1.72e-88
protein domain specific binding	Hs	molecular function	273	1.72e-88
intracellular ribonucleoprotein complex	Hs	cellular component	273	1.72e-88
miRNA binding	Hs	molecular function	273	1.72e-88
ribonucleoprotein granule	Hs	cellular component	270	3.88e-87
pre-mRNA binding	Hs	molecular function	273	1.72e-88
neuron projection	Hs	cellular component	270	3.88e-87
RNA transmembrane transporter activity	Hs	molecular function	270	3.88e-87
telomeric repeat-containing RNA binding	Hs	molecular function	273	1.72e-88
extracellular exosome	Hs	cellular component	273	1.72e-88
catalytic step 2 spliceosome	Hs	cellular component	273	1.72e-88
G-rich strand telomeric DNA binding	Hs	molecular function	273	1.72e-88
messenger ribonucleoprotein complex	Hs	cellular component	270	3.88e-87

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	4.89E-46