Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000007565
NCBI Reference Sequence	NM_001032772.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cilv039m12

Plate: R1CiGC28c18

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

30 results

Ci-RhoD -3406/1048 REG00000650 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -3406/601 REG00000651 [ regulatory_region (extended_promoter) ]
  - Ci-RhoD -3406/83 REG00000652 [ regulatory_region (extended_promoter) ]
    - Ci-RhoD -2606/82 REG00000653 [ regulatory_region (extended_promoter) ]
      - Ci-RhoD -1299/83 REG00000654 [ regulatory_region (extended_promoter) ]
- Ci-RhoD -2606/1049 REG00000655 [ regulatory_region (extended_promoter) ]
  - Ci-RhoD -1299/1049 REG00000656 [ regulatory_region (extended_promoter) ]
    - Ci-RhoD -1005/1048 REG00000657 [ regulatory_region (extended_promoter) ]
      - Ci-RhoD -645/1049 REG00000658 [ regulatory_region (extended_promoter) ]
        
        Ci-RhoD -441/1049 REG00000659 [ regulatory_region (extended_promoter) ]
        
        Ci-RhoD 228/989 REG00000660 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 448/990 REG00000664 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 REG00000661 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 647/989 REG00000662 [ inactive_region ]
        
        Ci-RhoD 819/989 REG00000663 [ inactive_region ]
        
        Ci-RhoD 565/989 FoxF1 mutated REG00000669 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 FoxF2 mutated REG00000670 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 FoxF3 mutated REG00000671 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 FoxF4 mutated REG00000672 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 FoxF2/3 mutated REG00000673 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 FoxF2/4 mutated REG00000674 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 FoxF3/4 mutated REG00000675 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 FoxF2/3/4 mutated REG00000676 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 Ets1/2-1 mutated REG00000677 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 Ets1/2-2 mutated REG00000678 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 565/989 Ets1/2-1-2 mutated REG00000679 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 448/835 REG00000665 [ regulatory_region (enhancer) ]
        
        Ci-RhoD 448/576 REG00000668 [ inactive_region ]
        
        Ci-RhoD 228/835 REG00000666 [ inactive_region ]
        
        Ci-RhoD 228/575 REG00000667 [ inactive_region ]

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Small_GTP-bd_dom	TIGRFAM	Small GTP-binding protein domain
Small_GTPase	Pfam	Small GTPase superfamily
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Small_GTPase_Rho	ProSiteProfiles	Small GTPase superfamily, Rho type

GOSlim

48 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
GTPase activity	Orthology	molecular function
protein binding	Blast	molecular function
GTP binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Blast	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
endosome	Orthology	cellular component
early endosome	Orthology	cellular component
endoplasmic reticulum membrane	Blast	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
plasma membrane	Orthology	cellular component
focal adhesion	Blast	cellular component
cell adhesion	Orthology	biological process
small GTPase mediated signal transduction	Orthology	biological process
membrane	Orthology	cellular component
cell migration	Orthology	biological process
lamellipodium	Blast	cellular component
cell junction	Blast	cellular component
axon	Blast	cellular component
midbody	Blast	cellular component
vesicle	Blast	cellular component
cell projection	Blast	cellular component
extracellular exosome	Orthology	cellular component
cell periphery	Blast	cellular component
protein targeting	Orthology	biological process
protein kinase binding	Orthology	molecular function
organelle organization	Orthology	biological process
intracellular organelle part	Orthology	cellular component
whole membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
endomembrane system	Orthology	cellular component
regulation of signal transduction	Orthology	biological process
cell projection assembly	Orthology	biological process
cytoplasmic part	Blast	cellular component
cytoskeletal protein binding	Blast	molecular function
anion binding	Blast	molecular function
guanyl ribonucleotide binding	Blast	molecular function
purine ribonucleoside binding	Blast	molecular function
intracellular part	Blast	cellular component
plasma membrane part	Blast	cellular component
plasma membrane region	Blast	cellular component
cell projection membrane	Blast	cellular component
cell leading edge	Blast	cellular component
postsynapse	Blast	cellular component

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
GTPase activity	Hs	molecular function
GTP binding	Hs	molecular function
intracellular	Hs	cellular component
cytoplasm	Hs	cellular component
endosome	Hs	cellular component
early endosome	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
plasma membrane	Hs	cellular component
actin filament organization	Hs	biological process
small GTPase mediated signal transduction	Hs	biological process
Rho protein signal transduction	Hs	biological process
endosome membrane	Hs	cellular component
membrane	Hs	cellular component
positive regulation of cell migration	Hs	biological process
secretory granule membrane	Hs	cellular component
positive regulation of cell adhesion	Hs	biological process
regulation of small GTPase mediated signal transduction	Hs	biological process
extracellular exosome	Hs	cellular component
protein targeting	Hs	biological process
protein kinase binding	Hs	molecular function
lamellipodium assembly	Hs	biological process
focal adhesion assembly	Hs	biological process
actin filament bundle assembly	Hs	biological process
regulation of actin cytoskeleton reorganization	Hs	biological process

GO (Blast)

39 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	173	2.43e-54
GTPase activity	Hs	molecular function	173	2.43e-54
protein binding	Hs	molecular function	173	2.43e-54
GTP binding	Hs	molecular function	173	2.43e-54
intracellular	Hs	cellular component	173	2.43e-54
nucleus	Hs	cellular component	173	2.43e-54
cytoplasm	Hs	cellular component	172	6.07e-54
mitochondrion	Hs	cellular component	172	6.07e-54
endosome	Hs	cellular component	173	2.43e-54
early endosome	Hs	cellular component	173	2.43e-54
late endosome	Hs	cellular component	173	2.43e-54
endoplasmic reticulum membrane	Hs	cellular component	172	6.07e-54
cytosol	Hs	cellular component	173	2.43e-54
cytoskeleton	Hs	cellular component	172	6.07e-54
plasma membrane	Hs	cellular component	173	2.43e-54
focal adhesion	Hs	cellular component	173	2.43e-54
cell cortex	Hs	cellular component	172	6.07e-54
endosome membrane	Hs	cellular component	173	2.43e-54
membrane	Hs	cellular component	173	2.43e-54
myosin binding	Hs	molecular function	172	6.07e-54
GDP binding	Hs	molecular function	173	2.43e-54
protein domain specific binding	Hs	molecular function	172	6.07e-54
lamellipodium	Hs	cellular component	172	6.07e-54
cell junction	Hs	cellular component	172	6.07e-54
axon	Hs	cellular component	172	6.07e-54
midbody	Hs	cellular component	172	6.07e-54
secretory granule membrane	Hs	cellular component	172	6.07e-54
extrinsic component of cytoplasmic side of plasma membrane	Hs	cellular component	172	6.07e-54
late endosome membrane	Hs	cellular component	173	2.43e-54
vesicle	Hs	cellular component	172	6.07e-54
cleavage furrow	Hs	cellular component	173	2.43e-54
ruffle membrane	Hs	cellular component	172	6.07e-54
cell projection	Hs	cellular component	172	6.07e-54
dendritic spine	Hs	cellular component	172	6.07e-54
apical junction complex	Hs	cellular component	172	6.07e-54
Rho GDP-dissociation inhibitor binding	Hs	molecular function	172	6.07e-54
extracellular exosome	Hs	cellular component	173	2.43e-54
cell periphery	Hs	cellular component	172	6.07e-54
ficolin-1-rich granule membrane	Hs	cellular component	172	6.07e-54

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
GTPase activity	Pfam	molecular function	4.8E-51
GTP binding	Pfam	molecular function	4.8E-51
intracellular	ProSiteProfiles	cellular component	23.037
small GTPase mediated signal transduction	ProSiteProfiles	biological process	23.037

Gene Card

Best human hits

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Unique Gene ID

Gene Model ID

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