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Gene Card

Best human hits

KHDRBS1; KHDRBS2; KHDRBS3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000353

Gene Model ID

KH2012:KH.C1.144

Location

KhC1:8220724..8231138

Transcript Models and Sequences

  KH2012:KH.C1.144.v1.A.ND1-2
KH2012:KH.C1.144.v1.A.nonSL3-2
KH2012:KH.C1.144.v1.A.nonSL4-2
KH2012:KH.C1.144.v1.A.nonSL5-2
KH2012:KH.C1.144.v1.A.nonSL6-2
KH2012:KH.C1.144.v2.A.ND1-1
KH2012:KH.C1.144.v2.A.nonSL3-1
KH2012:KH.C1.144.v2.A.nonSL4-1
KH2012:KH.C1.144.v2.A.nonSL5-1
KH2012:KH.C1.144.v2.A.nonSL6-1
KH2012:KH.C1.144.v3.A.nonSL10-2
KH2012:KH.C1.144.v3.A.nonSL7-2
KH2012:KH.C1.144.v3.A.nonSL8-2
KH2012:KH.C1.144.v3.A.nonSL9-2
KH2012:KH.C1.144.v3.R.ND2-2
KH2012:KH.C1.144.v4.A.ND1-2
KH2012:KH.C1.144.v4.A.nonSL3-2
KH2012:KH.C1.144.v4.A.nonSL4-2
KH2012:KH.C1.144.v4.A.nonSL5-2
KH2012:KH.C1.144.v4.A.nonSL6-2
KH2012:KH.C1.144.v5.A.ND1-1
KH2012:KH.C1.144.v5.A.nonSL3-1
KH2012:KH.C1.144.v5.A.nonSL4-1
KH2012:KH.C1.144.v5.A.nonSL5-1
KH2012:KH.C1.144.v5.A.nonSL6-1

External Database Gene Card

External database links

6 results

Database Gene ID
ENSEMBL ENSCING00000012483
NCBI Reference Sequence XM_009864180.2
NCBI Reference Sequence XM_018815323.1
NCBI Reference Sequence XM_018815325.1
NCBI Reference Sequence XR_001975124.1
NCBI Reference Sequence XR_001975125.1
Collections

Gateway full ORF

2 results

cien62439

Plate: VES80_D03

cien69329

Plate: VES81_B03

Gene collection 1 (N. Satoh)

2 results

cicl051j23

Plate: R1CiGC14c07

cilv036h04

Plate: R1CiGC28a11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Qua1_dom Pfam KHDRBS, Qua1 domain
KH_dom SMART K Homology domain
KH_dom_type_1_sf Gene3D K Homology domain, type 1 superfamily
KH_dom_type_1 Pfam K Homology domain, type 1
KH_dom_type_1_sf SUPERFAMILY K Homology domain, type 1 superfamily

GOSlim

31 results

GO Term Annotation Origin Type
G2/M transition of mitotic cell cycle Orthology biological process
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
mRNA processing Orthology biological process
cell cycle Orthology biological process
signal transduction Orthology biological process
cell surface receptor signaling pathway Orthology biological process
spermatogenesis Orthology biological process
cell proliferation Orthology biological process
positive regulation of signal transduction Orthology biological process
membrane Orthology cellular component
identical protein binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
protein heterodimerization activity Orthology molecular function
protein oligomerization Orthology biological process
positive regulation of gene expression Orthology biological process
translational initiation Orthology biological process
intracellular transport Orthology biological process
organic substance transport Orthology biological process
mRNA splicing, via spliceosome Orthology biological process
regulation of gene expression Orthology biological process
plasma membrane part Orthology cellular component
macromolecular complex Orthology cellular component

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
G2/M transition of mitotic cell cycle Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
SH3/SH2 adaptor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
mRNA processing Hs biological process
cell cycle Hs biological process
cell cycle arrest Hs biological process
signal transduction Hs biological process
cell surface receptor signaling pathway Hs biological process
spermatogenesis Hs biological process
poly(A) binding Hs molecular function
poly(U) RNA binding Hs molecular function
cell proliferation Hs biological process
positive regulation of signal transduction Hs biological process
membrane Hs cellular component
SH3 domain binding Hs molecular function
protein domain specific binding Hs molecular function
SH2 domain binding Hs molecular function
identical protein binding Hs molecular function
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of translational initiation Hs biological process
positive regulation of RNA export from nucleus Hs biological process
protein heterodimerization activity Hs molecular function
regulation of mRNA splicing, via spliceosome Hs biological process
protein oligomerization Hs biological process
Grb2-Sos complex Hs cellular component

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleic acid binding Hs molecular function 165 5.16e-48
DNA binding Hs molecular function 155 2.70e-43
RNA binding Hs molecular function 165 5.16e-48
SH3/SH2 adaptor activity Hs molecular function 155 2.70e-43
protein binding Hs molecular function 165 5.16e-48
nucleus Hs cellular component 165 5.16e-48
nucleoplasm Hs cellular component 165 5.16e-48
cytoplasm Hs cellular component 155 2.70e-43
cytosol Hs cellular component 155 2.70e-43
poly(A) binding Hs molecular function 155 2.70e-43
poly(U) RNA binding Hs molecular function 155 2.70e-43
membrane Hs cellular component 155 2.70e-43
SH3 domain binding Hs molecular function 165 5.16e-48
protein domain specific binding Hs molecular function 165 5.16e-48
SH2 domain binding Hs molecular function 149 6.68e-42
identical protein binding Hs molecular function 165 5.16e-48
protein heterodimerization activity Hs molecular function 149 6.68e-42
Grb2-Sos complex Hs cellular component 155 2.70e-43

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 1.1E-5
RNA binding Gene3D molecular function 9.3E-41

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