Aniseed - Gene card

Gene Card

Best human hits

DKC1; TRUB1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000354

Gene Model ID

KH2012:KH.C1.145

Location

KhC1:3998467..4002647

Transcript Models and Sequences

KH2012:KH.C1.145.v1.A.nonSL3-1
KH2012:KH.C1.145.v1.R.ND1-1
KH2012:KH.C1.145.v2.A.nonSL3-1
KH2012:KH.C1.145.v2.R.ND1-1
KH2012:KH.C1.145.v3.A.ND2-2

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000004599

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

5 results

cilv018e22

Plate: R1CiGC26h07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
tRNA_PsdUridine_synth_B_fam	PANTHER	tRNA pseudouridine synthase B family
PUA-like_sf	SUPERFAMILY	PUA-like superfamily
Uncharacterised_CHP00451	TIGRFAM	Uncharacterised domain CHP00451
Dyskerin-like	Pfam	Dyskerin-like
PUA	ProSiteProfiles	PUA domain
TruB_C	Pfam	tRNA pseudouridylate synthase B, C-terminal
PsdUridine_synth_cat_dom_sf	SUPERFAMILY	Pseudouridine synthase, catalytic domain superfamily
PsdUridine_synth_N	Pfam	Pseudouridine synthase II, N-terminal
PUA	Pfam	PUA domain
PUA	SMART	PUA domain
Dyskerin-like	SMART	Dyskerin-like
tRNA_PsdUridine_synth_B_fam	TIGRFAM	tRNA pseudouridine synthase B family

GOSlim

20 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
RNA processing	Orthology	biological process
cell proliferation	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
RNA metabolic process	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
DNA metabolic process	Orthology	biological process
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organelle organization	Orthology	biological process
catalytic activity	Orthology	molecular function
nuclear body	Orthology	cellular component
mRNA metabolic process	Orthology	biological process

GO (Orthology)

33 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
box H/ACA snoRNA 3'-end processing	Hs	biological process
pseudouridine synthesis	Hs	biological process
fibrillar center	Hs	cellular component
telomerase activity	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
telomerase holoenzyme complex	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
rRNA processing	Hs	biological process
RNA processing	Hs	biological process
telomere maintenance via telomerase	Hs	biological process
cell proliferation	Hs	biological process
RNA modification	Hs	biological process
pseudouridine synthase activity	Hs	molecular function
Cajal body	Hs	cellular component
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
isomerase activity	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
rRNA pseudouridine synthesis	Hs	biological process
snRNA pseudouridine synthesis	Hs	biological process
box H/ACA snoRNP complex	Hs	cellular component
positive regulation of telomere maintenance via telomerase	Hs	biological process
box H/ACA snoRNA binding	Hs	molecular function
ribosome biogenesis	Hs	biological process
telomerase RNA binding	Hs	molecular function
box H/ACA scaRNP complex	Hs	cellular component
box H/ACA telomerase RNP complex	Hs	cellular component
positive regulation of telomerase RNA localization to Cajal body	Hs	biological process
mRNA pseudouridine synthesis	Hs	biological process

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
fibrillar center	Hs	cellular component	659	0.0
telomerase activity	Hs	molecular function	659	0.0
RNA binding	Hs	molecular function	659	0.0
protein binding	Hs	molecular function	659	0.0
nucleus	Hs	cellular component	659	0.0
nucleoplasm	Hs	cellular component	659	0.0
telomerase holoenzyme complex	Hs	cellular component	659	0.0
nucleolus	Hs	cellular component	659	0.0
cytoplasm	Hs	cellular component	659	0.0
mitochondrion	Hs	cellular component	59.3	1.75e-09
pseudouridine synthase activity	Hs	molecular function	659	0.0
Cajal body	Hs	cellular component	659	0.0
membrane	Hs	cellular component	659	0.0
integral component of membrane	Hs	cellular component	659	0.0
isomerase activity	Hs	molecular function	659	0.0
intracellular ribonucleoprotein complex	Hs	cellular component	659	0.0
box H/ACA snoRNP complex	Hs	cellular component	659	0.0
box H/ACA snoRNA binding	Hs	molecular function	659	0.0
telomerase RNA binding	Hs	molecular function	659	0.0
box H/ACA scaRNP complex	Hs	cellular component	659	0.0
box H/ACA telomerase RNP complex	Hs	cellular component	659	0.0

GO (InterProScan)