Aniseed - Gene card

Gene Card

Best human hits

SSU72

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000390

Gene Model ID

KH2012:KH.C1.178

Location

KhC1:1966960..1972653

Transcript Models and Sequences

KH2012:KH.C1.178.v1.A.nonSL3-1
KH2012:KH.C1.178.v1.A.SL1-1
KH2012:KH.C1.178.v1.A.SL4-1
KH2012:KH.C1.178.v2.R.ND2-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000004387

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg008h16

Plate: R1CiGC16d16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
RNA_pol_II_suA	PANTHER	RNA polymerase II subunit A
RNA_pol_II_suA	Pfam	RNA polymerase II subunit A

GOSlim

12 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
mRNA processing	Orthology	biological process
hydrolase activity	Orthology	molecular function
protein dephosphorylation	Orthology	biological process
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transcription from RNA polymerase II promoter	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
phosphoprotein phosphatase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
mRNA cleavage and polyadenylation specificity factor complex	Hs	cellular component
termination of RNA polymerase II transcription	Hs	biological process
mRNA polyadenylation	Hs	biological process
mRNA processing	Hs	biological process
CTD phosphatase activity	Hs	molecular function
hydrolase activity	Hs	molecular function
dephosphorylation of RNA polymerase II C-terminal domain	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
phosphoprotein phosphatase activity	Hs	molecular function	263	1.83e-90
protein binding	Hs	molecular function	263	1.83e-90
nucleus	Hs	cellular component	263	1.83e-90
nucleoplasm	Hs	cellular component	263	1.83e-90
cytoplasm	Hs	cellular component	263	1.83e-90
cytosol	Hs	cellular component	263	1.83e-90
mRNA cleavage and polyadenylation specificity factor complex	Hs	cellular component	263	1.83e-90
CTD phosphatase activity	Hs	molecular function	263	1.83e-90
hydrolase activity	Hs	molecular function	263	1.83e-90

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
phosphoprotein phosphatase activity	PANTHER	molecular function	2.6E-71
nucleus	PANTHER	cellular component	2.6E-71
mRNA processing	PANTHER	biological process	2.6E-71