Aniseed - Gene card

Gene Card

Best human hits

MYL1; MYL3; MYL4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000433

Gene Model ID

KH2012:KH.C1.216

Location

KhC1:7177568..7182418

Transcript Models and Sequences

KH2012:KH.C1.216.v10.A.SL3-1
KH2012:KH.C1.216.v11.A.SL1-1
KH2012:KH.C1.216.v11.A.SL2-1
KH2012:KH.C1.216.v1.A.SL1-1
KH2012:KH.C1.216.v1.A.SL2-1
KH2012:KH.C1.216.v2.A.SL1-1
KH2012:KH.C1.216.v2.A.SL2-1
KH2012:KH.C1.216.v3.A.SL3-1
KH2012:KH.C1.216.v4.A.ND4-1
KH2012:KH.C1.216.v5.A.SL1-1
KH2012:KH.C1.216.v5.A.SL2-1
KH2012:KH.C1.216.v6.A.SL3-1
KH2012:KH.C1.216.v7.A.SL1-1
KH2012:KH.C1.216.v7.A.SL2-1
KH2012:KH.C1.216.v8.A.SL3-1
KH2012:KH.C1.216.v9.A.SL1-1
KH2012:KH.C1.216.v9.A.SL2-1

External Database Gene Card

External database links

13 results

Database	Gene ID
ENSEMBL	ENSCING00000004818
NCBI Reference Sequence	XM_002127636.4
NCBI Reference Sequence	XM_004225504.3
NCBI Reference Sequence	XM_004225505.3
NCBI Reference Sequence	XM_004225506.3
NCBI Reference Sequence	XM_004225507.3
NCBI Reference Sequence	XM_009864130.2
NCBI Reference Sequence	XM_009864131.2
NCBI Reference Sequence	XM_009864132.2
NCBI Reference Sequence	XM_009864133.2
NCBI Reference Sequence	XM_009864135.2
NCBI Reference Sequence	XM_009864136.2
NCBI Reference Sequence	XM_009864137.2

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

citb039k04

Plate: R1CiGC32b08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
EF_hand_dom	ProSiteProfiles	EF-hand domain
EF_hand_dom	CDD	EF-hand domain
EF-hand-dom_pair	SUPERFAMILY	EF-hand domain pair

GOSlim

22 results

GO Term	Annotation Origin	Type
motor activity	Orthology	molecular function
calcium ion binding	Orthology	molecular function
cytosol	Orthology	cellular component
actin filament binding	Orthology	molecular function
protein binding	Orthology	molecular function
brush border	Orthology	cellular component
membrane	Orthology	cellular component
vesicle	Orthology	cellular component
extracellular exosome	Orthology	cellular component
actin binding	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
cytoskeletal part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
animal organ development	Orthology	biological process
structural molecule activity	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
organelle part	Orthology	cellular component
cytoskeletal protein binding	Orthology	molecular function
positive regulation of hydrolase activity	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
heart development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process

GO (Orthology)

27 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
motor activity	Hs	molecular function
actin monomer binding	Hs	molecular function
calcium ion binding	Hs	molecular function
cytosol	Hs	cellular component
muscle myosin complex	Hs	cellular component
muscle contraction	Hs	biological process
regulation of striated muscle contraction	Hs	biological process
skeletal muscle tissue development	Hs	biological process
structural constituent of muscle	Hs	molecular function
myosin complex	Hs	cellular component
myofibril	Hs	cellular component
sarcomere	Hs	cellular component
A band	Hs	cellular component
I band	Hs	cellular component
myosin II heavy chain binding	Hs	molecular function
positive regulation of ATPase activity	Hs	biological process
contractile fiber	Hs	cellular component
actin filament binding	Hs	molecular function
ventricular cardiac muscle tissue morphogenesis	Hs	biological process
cardiac muscle contraction	Hs	biological process
protein binding	Hs	molecular function
brush border	Hs	cellular component
membrane	Hs	cellular component
unconventional myosin complex	Hs	cellular component
actin-dependent ATPase activity	Hs	molecular function
vesicle	Hs	cellular component
extracellular exosome	Hs	cellular component

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
motor activity	Hs	molecular function	186	6.06e-61
actin monomer binding	Hs	molecular function	198	1.28e-65
calcium ion binding	Hs	molecular function	200	1.22e-66
cytosol	Hs	cellular component	200	1.22e-66
muscle myosin complex	Hs	cellular component	200	1.22e-66
structural constituent of muscle	Hs	molecular function	200	1.22e-66
myosin complex	Hs	cellular component	200	1.22e-66
myofibril	Hs	cellular component	200	1.22e-66
sarcomere	Hs	cellular component	200	1.22e-66
A band	Hs	cellular component	198	1.28e-65
I band	Hs	cellular component	186	6.06e-61
myosin II heavy chain binding	Hs	molecular function	198	1.28e-65
contractile fiber	Hs	cellular component	200	1.22e-66
actin filament binding	Hs	molecular function	198	1.28e-65

GO (InterProScan)