Aniseed - Gene card

Gene Card

Best human hits

COL4A1; COL4A2; COL4A6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000464

Gene Model ID

KH2012:KH.C1.244

Location

KhC1:5607649..5618669

Transcript Models and Sequences

KH2012:KH.C1.244.v1.A.nonSL5-1
KH2012:KH.C1.244.v1.A.SL1-1
KH2012:KH.C1.244.v1.A.SL2-1
KH2012:KH.C1.244.v1.A.SL3-1
KH2012:KH.C1.244.v1.A.SL4-1
KH2012:KH.C1.244.v1.A.SL6-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000007817
NCBI Reference Sequence	XM_018813019.1
NCBI Reference Sequence	XM_018814846.1
NCBI Reference Sequence	XM_018817500.1

Collections

Gene collection 1 (N. Satoh)

5 results

citb043n11

Plate: R1CiGC33e20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Collagen	Pfam	Collagen triple helix repeat
CTDL_fold	SUPERFAMILY	C-type lectin fold
Collagen_IV_NC_sf	Gene3D	Collagen IV, non-collagenous domain superfamily
Collagen_IV_NC	ProSiteProfiles	Collagen IV, non-collagenous
Collagen_IV_NC	Pfam	Collagen IV, non-collagenous
Collagen_IV_NC	SMART	Collagen IV, non-collagenous

GOSlim

21 results

GO Term	Annotation Origin	Type
angiogenesis	Orthology	biological process
structural molecule activity	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular region	Orthology	cellular component
extracellular space	Orthology	cellular component
endoplasmic reticulum lumen	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
cell adhesion	Orthology	biological process
extracellular matrix organization	Orthology	biological process
extracellular exosome	Orthology	cellular component
extracellular region part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
developmental process	Orthology	biological process
response to stimulus	Orthology	biological process
catabolic process	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
multicellular organism development	Orthology	biological process
cell differentiation	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
animal organ development	Orthology	biological process

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
angiogenesis	Hs	biological process
structural molecule activity	Hs	molecular function
extracellular matrix structural constituent	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
proteinaceous extracellular matrix	Hs	cellular component
collagen trimer	Hs	cellular component
collagen type IV trimer	Hs	cellular component
basement membrane	Hs	cellular component
extracellular space	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
transcription, DNA-templated	Hs	biological process
cell adhesion	Hs	biological process
aging	Hs	biological process
response to activity	Hs	biological process
negative regulation of angiogenesis	Hs	biological process
extracellular matrix organization	Hs	biological process
collagen catabolic process	Hs	biological process
extracellular matrix	Hs	cellular component
endodermal cell differentiation	Hs	biological process
collagen-activated tyrosine kinase receptor signaling pathway	Hs	biological process
extracellular exosome	Hs	cellular component
cellular response to amino acid stimulus	Hs	biological process
cellular response to transforming growth factor beta stimulus	Hs	biological process
basal lamina	Hs	cellular component
glomerular basement membrane development	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
structural molecule activity	Hs	molecular function	740	0.0
extracellular matrix structural constituent	Hs	molecular function	740	0.0
protein binding	Hs	molecular function	615	0.0
extracellular region	Hs	cellular component	740	0.0
proteinaceous extracellular matrix	Hs	cellular component	740	0.0
collagen trimer	Hs	cellular component	740	0.0
collagen type IV trimer	Hs	cellular component	740	0.0
basement membrane	Hs	cellular component	740	0.0
extracellular space	Hs	cellular component	615	0.0
endoplasmic reticulum lumen	Hs	cellular component	740	0.0
extracellular matrix constituent conferring elasticity	Hs	molecular function	570	7.50e-174
extracellular matrix	Hs	cellular component	615	0.0
platelet-derived growth factor binding	Hs	molecular function	570	7.50e-174
extracellular exosome	Hs	cellular component	615	0.0

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
extracellular matrix structural constituent	Gene3D	molecular function	3.2E-109
collagen trimer	Gene3D	cellular component	3.2E-109