Aniseed - Gene card

Gene Card

Best human hits

ATF1; CREB1; CREM

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000481

Gene Model ID

KH2012:KH.C1.26

Location

KhC1:7313746..7321275

Transcript Models and Sequences

External Database Gene Card

External database links

9 results

Database	Gene ID
ENSEMBL	ENSCING00000004753
NCBI Reference Sequence	NM_001100133.1
NCBI Reference Sequence	XM_009864028.2
NCBI Reference Sequence	XM_009864029.2
NCBI Reference Sequence	XM_009864030.2
NCBI Reference Sequence	XM_009864031.2
NCBI Reference Sequence	XM_009864032.2
NCBI Reference Sequence	XM_018812560.1
NCBI Reference Sequence	XM_018812812.1

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cits045d05

Plate: R1CiGC35h21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

3 results

CREB/ATF-c 3238/5659 REG00000707 [ no_output ]
- CREB/ATF-c 3238/3404 REG00000257 [ inactive_region ]
- CREB/ATF-c 5494/5659 REG00000708 [ inactive_region ]

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
bZIP	SMART	Basic-leucine zipper domain
CREB1	PANTHER	cAMP-responsive element-binding protein 1
Leuzip_CREB	PRINTS	cAMP response element binding (CREB) protein
bZIP	Pfam	Basic-leucine zipper domain
bZIP	ProSiteProfiles	Basic-leucine zipper domain
Coactivator_CBP_pKID	Pfam	Coactivator CBP, pKID
Coactivator_CBP_pKID	ProSiteProfiles	Coactivator CBP, pKID
bZIP	ProSitePatterns	Basic-leucine zipper domain

GOSlim

62 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Orthology	molecular function
response to hypoxia	Orthology	biological process
DNA binding	Orthology	molecular function
double-stranded DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription cofactor activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
protein phosphorylation	Orthology	biological process
signal transduction	Orthology	biological process
multicellular organism development	Orthology	biological process
spermatogenesis	Orthology	biological process
axonogenesis	Orthology	biological process
axon guidance	Orthology	biological process
transcription factor binding	Orthology	molecular function
response to organic substance	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
enzyme binding	Orthology	molecular function
cell differentiation	Orthology	biological process
axon	Orthology	cellular component
identical protein binding	Orthology	molecular function
regulation of apoptotic process	Orthology	biological process
positive regulation of apoptotic process	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Orthology	molecular function
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
protein heterodimerization activity	Orthology	molecular function
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organic substance metabolic process	Orthology	biological process
cellular metabolic process	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
developmental process	Orthology	biological process
nervous system process	Orthology	biological process
cellular component organization	Orthology	biological process
neuron projection development	Orthology	biological process
response to stimulus	Orthology	biological process
brain development	Orthology	biological process
organelle organization	Orthology	biological process
intracellular signal transduction	Orthology	biological process
DNA replication	Orthology	biological process
transcription initiation from RNA polymerase II promoter	Orthology	biological process
cell-cell signaling	Orthology	biological process
negative regulation of cell death	Orthology	biological process
nuclear part	Orthology	cellular component

GO (Orthology)

89 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
chromatin	Hs	cellular component
nuclear chromatin	Hs	cellular component
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
RNA polymerase II activating transcription factor binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II transcription factor binding	Hs	molecular function
RNA polymerase II transcription coactivator binding	Hs	molecular function
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
response to hypoxia	Hs	biological process
DNA binding	Hs	molecular function
double-stranded DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function
transcription cofactor activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription factor complex	Hs	cellular component
nuclear euchromatin	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
glucose metabolic process	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
protein phosphorylation	Hs	biological process
fatty acid metabolic process	Hs	biological process
glycosphingolipid metabolic process	Hs	biological process
signal transduction	Hs	biological process
transforming growth factor beta receptor signaling pathway	Hs	biological process
multicellular organism development	Hs	biological process
spermatogenesis	Hs	biological process
axonogenesis	Hs	biological process
axon guidance	Hs	biological process
aging	Hs	biological process
memory	Hs	biological process
circadian rhythm	Hs	biological process
transcription factor binding	Hs	molecular function
cAMP response element binding protein binding	Hs	molecular function
regulation of cell size	Hs	biological process
visual learning	Hs	biological process
response to organic substance	Hs	biological process
negative regulation of gene expression	Hs	biological process
positive regulation of neuron projection development	Hs	biological process
response to organic cyclic compound	Hs	biological process
response to activity	Hs	biological process
viral process	Hs	biological process
enzyme binding	Hs	molecular function
pituitary gland development	Hs	biological process
cell differentiation	Hs	biological process
axon	Hs	cellular component
Hsp70 protein binding	Hs	molecular function
secretory granule organization	Hs	biological process
histone acetyltransferase binding	Hs	molecular function
response to nicotine	Hs	biological process
cAMP response element binding	Hs	molecular function
positive regulation of multicellular organism growth	Hs	biological process
response to drug	Hs	biological process
regulation of circadian rhythm	Hs	biological process
identical protein binding	Hs	molecular function
regulation of apoptotic process	Hs	biological process
positive regulation of apoptotic process	Hs	biological process
protein kinase B signaling	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function
positive regulation of fat cell differentiation	Hs	biological process
positive regulation of DNA replication	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
positive regulation of hormone secretion	Hs	biological process
positive regulation of lipid biosynthetic process	Hs	biological process
protein heterodimerization activity	Hs	molecular function
retinoic acid receptor signaling pathway	Hs	biological process
rhythmic process	Hs	biological process
protein stabilization	Hs	biological process
cellular response to zinc ion	Hs	biological process
cellular response to transforming growth factor beta stimulus	Hs	biological process
negative regulation of neuron death	Hs	biological process
ATF4-CREB1 transcription factor complex	Hs	cellular component
ATF1-ATF4 transcription factor complex	Hs	cellular component
arrestin family protein binding	Hs	molecular function

GO (Blast)

39 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromatin	Hs	cellular component	190	2.10e-58
nuclear chromatin	Hs	cellular component	190	2.10e-58
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	169	2.28e-50
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	190	2.10e-58
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	190	2.10e-58
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	190	2.10e-58
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	190	2.10e-58
RNA polymerase II activating transcription factor binding	Hs	molecular function	190	2.10e-58
transcriptional activator activity, RNA polymerase II transcription factor binding	Hs	molecular function	190	2.10e-58
RNA polymerase II transcription coactivator binding	Hs	molecular function	190	2.10e-58
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	169	2.28e-50
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	155	5.79e-46
DNA binding	Hs	molecular function	190	2.10e-58
double-stranded DNA binding	Hs	molecular function	190	2.10e-58
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	190	2.10e-58
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	190	2.10e-58
transcription cofactor activity	Hs	molecular function	190	2.10e-58
protein binding	Hs	molecular function	190	2.10e-58
nucleus	Hs	cellular component	190	2.10e-58
nucleoplasm	Hs	cellular component	190	2.10e-58
transcription factor complex	Hs	cellular component	190	2.10e-58
nuclear euchromatin	Hs	cellular component	190	2.10e-58
cytoplasm	Hs	cellular component	169	2.28e-50
mitochondrion	Hs	cellular component	190	2.10e-58
mitochondrial matrix	Hs	cellular component	190	2.10e-58
transcription factor binding	Hs	molecular function	190	2.10e-58
cAMP response element binding protein binding	Hs	molecular function	169	2.28e-50
enzyme binding	Hs	molecular function	190	2.10e-58
axon	Hs	cellular component	190	2.10e-58
Hsp70 protein binding	Hs	molecular function	190	2.10e-58
histone acetyltransferase binding	Hs	molecular function	190	2.10e-58
cAMP response element binding	Hs	molecular function	190	2.10e-58
identical protein binding	Hs	molecular function	190	2.10e-58
sequence-specific DNA binding	Hs	molecular function	190	2.10e-58
transcription regulatory region DNA binding	Hs	molecular function	190	2.10e-58
protein heterodimerization activity	Hs	molecular function	155	5.79e-46
ATF4-CREB1 transcription factor complex	Hs	cellular component	190	2.10e-58
ATF1-ATF4 transcription factor complex	Hs	cellular component	155	5.79e-46
arrestin family protein binding	Hs	molecular function	190	2.10e-58

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
DNA binding	PRINTS	molecular function	1.0E-42
transcription factor activity, sequence-specific DNA binding	PRINTS	molecular function	1.0E-42
protein binding	Pfam	molecular function	1.3E-19
nucleus	PRINTS	cellular component	1.0E-42
regulation of transcription, DNA-templated	Pfam	biological process	1.3E-19