Aniseed - Gene card

Gene Card

Best human hits

RPL4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000485

Gene Model ID

KH2012:KH.C1.263

Location

KhC1:6435381..6436088

Transcript Models and Sequences

KH2012:KH.C1.263.v1.B.nonSL10-1
KH2012:KH.C1.263.v1.B.nonSL1-1
KH2012:KH.C1.263.v1.B.nonSL11-1
KH2012:KH.C1.263.v1.B.nonSL12-1
KH2012:KH.C1.263.v1.B.nonSL13-1
KH2012:KH.C1.263.v1.B.nonSL14-1
KH2012:KH.C1.263.v1.B.nonSL15-1
KH2012:KH.C1.263.v1.B.nonSL2-1
KH2012:KH.C1.263.v1.B.nonSL3-1
KH2012:KH.C1.263.v1.B.nonSL4-1
KH2012:KH.C1.263.v1.B.nonSL5-1
KH2012:KH.C1.263.v1.B.nonSL6-1
KH2012:KH.C1.263.v1.B.nonSL7-1
KH2012:KH.C1.263.v1.B.nonSL8-1
KH2012:KH.C1.263.v1.B.nonSL9-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000012701

Collections

Gateway full ORF

1 result

cima823455

Plate: VES60_E14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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No Phylogeny Tree for this Gene.

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Ribosomal_L4_dom_sf	SUPERFAMILY	Ribosomal protein L4 domain superfamily
Ribosomal_L4_dom_sf	Gene3D	Ribosomal protein L4 domain superfamily
Ribosomal_L4/L1e	Pfam	Ribosomal protein L4/L1e

GOSlim

13 results

GO Term	Annotation Origin	Type
RNA binding	Blast	molecular function
structural constituent of ribosome	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleolus	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
ribosome	Blast	cellular component
focal adhesion	Blast	cellular component
membrane	Blast	cellular component
extracellular exosome	Blast	cellular component
endoplasmic reticulum	Blast	cellular component
intracellular organelle part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	139	3.40e-41
structural constituent of ribosome	Hs	molecular function	139	3.40e-41
protein binding	Hs	molecular function	139	3.40e-41
nucleus	Hs	cellular component	139	3.40e-41
nucleolus	Hs	cellular component	139	3.40e-41
cytoplasm	Hs	cellular component	139	3.40e-41
rough endoplasmic reticulum	Hs	cellular component	139	3.40e-41
cytosol	Hs	cellular component	139	3.40e-41
ribosome	Hs	cellular component	139	3.40e-41
focal adhesion	Hs	cellular component	139	3.40e-41
membrane	Hs	cellular component	139	3.40e-41
cytosolic large ribosomal subunit	Hs	cellular component	139	3.40e-41
intracellular ribonucleoprotein complex	Hs	cellular component	139	3.40e-41
extracellular exosome	Hs	cellular component	139	3.40e-41

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	Gene3D	molecular function	2.1E-30
ribosome	Gene3D	cellular component	2.1E-30
translation	Gene3D	biological process	2.1E-30