Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 
  3. > 
  4. > 

Gene Card

Best human hits

EIF4A1; EIF4A2; EIF4A3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000511

Gene Model ID

KH2012:KH.C1.287

Location

KhC1:407015..413974

Transcript Models and Sequences

  KH2012:KH.C1.287.v1.A.nonSL2-1
KH2012:KH.C1.287.v1.A.nonSL3-1
KH2012:KH.C1.287.v1.A.nonSL4-1
KH2012:KH.C1.287.v1.A.nonSL5-1
KH2012:KH.C1.287.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000010780
NCBI Reference Sequence XM_002129403.4
Collections

Gateway full ORF

2 results

cien96727

Plate: VES85_K12

cima856075

Plate: VES63_D21

Gene collection 1 (N. Satoh)

1 result

cieg039k08

Plate: R1CiGC21h08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
Helicase_C CDD Helicase, C-terminal
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_C SMART Helicase, C-terminal
Helicase_C Pfam Helicase, C-terminal
EIF4A PANTHER Eukaryotic initiation factor 4A
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
RNA-helicase_DEAD-box_CS ProSitePatterns ATP-dependent RNA helicase DEAD-box, conserved site

GOSlim

25 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
translational initiation Orthology biological process
regulation of gene expression Orthology biological process
membrane Orthology cellular component
nuclear speck Blast cellular component
hydrolase activity Orthology molecular function
neuronal cell body Blast cellular component
perinuclear region of cytoplasm Orthology cellular component
extracellular exosome Orthology cellular component
nuclear-transcribed mRNA catabolic process Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
RNA metabolic process Orthology biological process
cytoplasmic part Orthology cellular component
macromolecular complex Orthology cellular component
nuclear part Blast cellular component
macromolecular complex binding Blast molecular function

GO (Orthology)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
RNA cap binding Hs molecular function
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
double-stranded RNA binding Hs molecular function
mRNA binding Hs molecular function
translation initiation factor activity Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
translation Hs biological process
translational initiation Hs biological process
regulation of translational initiation Hs biological process
translation factor activity, RNA binding Hs molecular function
regulation of gene expression Hs biological process
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
viral process Hs biological process
eukaryotic translation initiation factor 4F complex Hs cellular component
hydrolase activity Hs molecular function
ATPase activity Hs molecular function
perinuclear region of cytoplasm Hs cellular component
extracellular exosome Hs cellular component

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 638 0.0
RNA cap binding Hs molecular function 633 0.0
nucleic acid binding Hs molecular function 638 0.0
RNA binding Hs molecular function 638 0.0
double-stranded RNA binding Hs molecular function 633 0.0
mRNA binding Hs molecular function 633 0.0
translation initiation factor activity Hs molecular function 638 0.0
ATP-dependent RNA helicase activity Hs molecular function 638 0.0
helicase activity Hs molecular function 638 0.0
protein binding Hs molecular function 638 0.0
ATP binding Hs molecular function 638 0.0
nucleus Hs cellular component 546 0.0
nucleoplasm Hs cellular component 546 0.0
spliceosomal complex Hs cellular component 546 0.0
nucleolus Hs cellular component 638 0.0
cytoplasm Hs cellular component 633 0.0
cytosol Hs cellular component 638 0.0
translation factor activity, RNA binding Hs molecular function 633 0.0
poly(A) binding Hs molecular function 546 0.0
membrane Hs cellular component 633 0.0
eukaryotic translation initiation factor 4F complex Hs cellular component 638 0.0
nuclear speck Hs cellular component 546 0.0
hydrolase activity Hs molecular function 638 0.0
ATPase activity Hs molecular function 638 0.0
dendrite Hs cellular component 546 0.0
intracellular ribonucleoprotein complex Hs cellular component 546 0.0
exon-exon junction complex Hs cellular component 546 0.0
selenocysteine insertion sequence binding Hs molecular function 546 0.0
RNA stem-loop binding Hs molecular function 546 0.0
ribonucleoprotein complex binding Hs molecular function 546 0.0
neuronal cell body Hs cellular component 546 0.0
perinuclear region of cytoplasm Hs cellular component 638 0.0
extracellular exosome Hs cellular component 633 0.0
catalytic step 2 spliceosome Hs cellular component 546 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 6.0E-47
translation initiation factor activity PANTHER molecular function 3.0E-199
ATP-dependent RNA helicase activity PANTHER molecular function 3.0E-199
ATP binding Pfam molecular function 6.0E-47

Back to Top