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Gene Card

Best human hits

SNF8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000536

Gene Model ID

KH2012:KH.C1.309

Location

KhC1:1360345..1361427

Transcript Models and Sequences

  KH2012:KH.C1.309.v1.A.nonSL2-1
KH2012:KH.C1.309.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000006065
NCBI Reference Sequence XM_002125359.3
Collections

Gateway full ORF

2 results

cien67510

Plate: VES80_D19

cien214164

Plate: VES103_M12

Gene collection 1 (N. Satoh)

1 result

cieg001p17

Plate: R1CiGC15n01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
ESCRT-2_cplx_Snf8 PANTHER ESCRT-2 complex, Snf8
ESCRT-2_cplx_Snf8 PIRSF ESCRT-2 complex, Snf8

GOSlim

34 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
endosome Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
protein C-terminus binding Orthology molecular function
transcription factor binding Orthology molecular function
positive regulation of gene expression Orthology biological process
protein transport Orthology biological process
membrane Orthology cellular component
protein homodimerization activity Orthology molecular function
protein N-terminus binding Orthology molecular function
perinuclear region of cytoplasm Orthology cellular component
regulation of molecular function Orthology biological process
extracellular exosome Orthology cellular component
membrane part Orthology cellular component
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
macromolecular complex Orthology cellular component
intracellular part Orthology cellular component
intracellular transport Orthology biological process
cellular component organization Orthology biological process
molecular function regulator Orthology molecular function
protein metabolic process Orthology biological process
intracellular protein transport Orthology biological process
vacuole Orthology cellular component
proteolysis Orthology biological process
establishment of protein localization to organelle Orthology biological process

GO (Orthology)

37 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ESCRT II complex Hs cellular component
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
endosome Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
protein C-terminus binding Hs molecular function
transcription factor binding Hs molecular function
endosome membrane Hs cellular component
positive regulation of gene expression Hs biological process
regulation of multivesicular body size involved in endosome transport Hs biological process
protein transport Hs biological process
membrane Hs cellular component
endosomal transport Hs biological process
macroautophagy Hs biological process
channel regulator activity Hs molecular function
late endosome membrane Hs cellular component
endocytic recycling Hs biological process
multivesicular body assembly Hs biological process
regulation of protein catabolic process Hs biological process
protein homodimerization activity Hs molecular function
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Hs biological process
early endosome to late endosome transport Hs biological process
positive regulation of protein catabolic process Hs biological process
protein N-terminus binding Hs molecular function
perinuclear region of cytoplasm Hs cellular component
recycling endosome Hs cellular component
regulation of protein complex stability Hs biological process
regulation of molecular function Hs biological process
extracellular exosome Hs cellular component
multivesicular body sorting pathway Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ESCRT II complex Hs cellular component 313 8.43e-109
protein binding Hs molecular function 313 8.43e-109
nucleus Hs cellular component 313 8.43e-109
nucleoplasm Hs cellular component 313 8.43e-109
transcription factor complex Hs cellular component 313 8.43e-109
cytoplasm Hs cellular component 313 8.43e-109
endosome Hs cellular component 313 8.43e-109
cytosol Hs cellular component 313 8.43e-109
plasma membrane Hs cellular component 313 8.43e-109
protein C-terminus binding Hs molecular function 313 8.43e-109
transcription factor binding Hs molecular function 313 8.43e-109
endosome membrane Hs cellular component 313 8.43e-109
membrane Hs cellular component 313 8.43e-109
channel regulator activity Hs molecular function 313 8.43e-109
late endosome membrane Hs cellular component 313 8.43e-109
protein homodimerization activity Hs molecular function 313 8.43e-109
protein N-terminus binding Hs molecular function 313 8.43e-109
perinuclear region of cytoplasm Hs cellular component 313 8.43e-109
recycling endosome Hs cellular component 313 8.43e-109
extracellular exosome Hs cellular component 313 8.43e-109

GO (InterProScan)

2 results

GO Term Analysis Type e-value
ESCRT II complex PANTHER cellular component 3.6E-97
multivesicular body sorting pathway PANTHER biological process 3.6E-97

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