Aniseed - Gene card

Gene Card

Best human hits

RPL19

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000563

Gene Model ID

KH2012:KH.C1.333

Location

KhC1:6706543..6708701

Transcript Models and Sequences

KH2012:KH.C1.333.v1.A.nonSL1-1
KH2012:KH.C1.333.v1.A.nonSL2-1
KH2012:KH.C1.333.v1.A.nonSL3-1
KH2012:KH.C1.333.v1.A.nonSL4-1
KH2012:KH.C1.333.v1.A.nonSL5-1
KH2012:KH.C1.333.v1.A.nonSL6-1
KH2012:KH.C1.333.v1.A.nonSL7-1
KH2012:KH.C1.333.v1.A.nonSL8-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000004574
NCBI Reference Sequence	XM_002127096.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

4 results

cilv070c09

Plate: R1CiGC44d07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Ribosomal_L19/L19e	Hamap	Ribosomal protein L19/L19e
Ribosomal_L19/L19e_CS	ProSitePatterns	Ribosomal protein L19/L19e conserved site
Ribosomal_L19_euka	CDD	Ribosomal protein L19, eukaryotic
60S_ribosomal_L19/L19e_sf	SUPERFAMILY	Ribosomal protein L19/L19e superfamily
Ribosomal_L19/L19e_dom1	Gene3D	Ribosomal protein L19/L19e, domain 1
Ribosomal_L19/L19e	SMART	Ribosomal protein L19/L19e
Ribosomal_L19/L19e	Pfam	Ribosomal protein L19/L19e

GOSlim

13 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
membrane	Hs	cellular component
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
polysomal ribosome	Hs	cellular component
large ribosomal subunit rRNA binding	Hs	molecular function
5.8S rRNA binding	Hs	molecular function

GO (Blast)