Aniseed - Gene card

Gene Card

Best human hits

DDX39B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000596

Gene Model ID

KH2012:KH.C1.363

Location

KhC1:4726433..4730599

Transcript Models and Sequences

KH2012:KH.C1.363.v1.A.ND1-1
KH2012:KH.C1.363.v1.A.nonSL10-1
KH2012:KH.C1.363.v1.A.nonSL2-1
KH2012:KH.C1.363.v1.A.nonSL3-1
KH2012:KH.C1.363.v1.A.nonSL5-1
KH2012:KH.C1.363.v1.A.nonSL6-1
KH2012:KH.C1.363.v1.A.nonSL7-1
KH2012:KH.C1.363.v1.A.nonSL8-1
KH2012:KH.C1.363.v1.A.nonSL9-1
KH2012:KH.C1.363.v2.A.SL4-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000005175
NCBI Reference Sequence	XM_002127598.4
NCBI Reference Sequence	XM_018813825.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb1c19

Plate: R1CiGC28d05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain
Helicase_C	Pfam	Helicase, C-terminal
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
Helicase_C	SMART	Helicase, C-terminal
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Helicase_C	ProSiteProfiles	Helicase, C-terminal
Helicase_C	CDD	Helicase, C-terminal
RNA_helicase_DEAD_Q_motif	ProSiteProfiles	RNA helicase, DEAD-box type, Q motif

GOSlim

32 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear speck	Orthology	cellular component
hydrolase activity	Orthology	molecular function
identical protein binding	Orthology	molecular function
cellular response to DNA damage stimulus	Orthology	biological process
regulation of gene expression	Orthology	biological process
membrane	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
animal organ development	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
transcription from RNA polymerase II promoter	Orthology	biological process
organic substance transport	Orthology	biological process
intracellular transport	Orthology	biological process
intracellular protein transport	Orthology	biological process
gene expression	Orthology	biological process
RNA metabolic process	Orthology	biological process
nuclear lumen	Orthology	cellular component
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
cell cycle	Orthology	biological process

GO (Orthology)

41 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
spliceosomal complex assembly	Hs	biological process
transcription export complex	Hs	cellular component
mRNA splicing, via spliceosome	Hs	biological process
liver development	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
ATP-dependent RNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U4 snRNP	Hs	cellular component
U6 snRNP	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
termination of RNA polymerase II transcription	Hs	biological process
mRNA processing	Hs	biological process
RNA export from nucleus	Hs	biological process
mRNA export from nucleus	Hs	biological process
RNA-dependent ATPase activity	Hs	molecular function
RNA splicing	Hs	biological process
RNA secondary structure unwinding	Hs	biological process
nuclear matrix	Hs	cellular component
nuclear speck	Hs	cellular component
hydrolase activity	Hs	molecular function
ATPase activity	Hs	molecular function
U6 snRNA binding	Hs	molecular function
U4 snRNA binding	Hs	molecular function
mRNA 3'-end processing	Hs	biological process
positive regulation of DNA-templated transcription, elongation	Hs	biological process
identical protein binding	Hs	molecular function
ATP-dependent protein binding	Hs	molecular function
positive regulation of translation	Hs	biological process
mRNA transport	Hs	biological process
negative regulation of DNA damage checkpoint	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
regulation of gene expression	Hs	biological process
membrane	Hs	cellular component

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
nucleotide binding	Hs	molecular function	758
transcription export complex	Hs	cellular component	758
nucleic acid binding	Hs	molecular function	758
RNA binding	Hs	molecular function	758
ATP-dependent RNA helicase activity	Hs	molecular function	758
helicase activity	Hs	molecular function	758
protein binding	Hs	molecular function	758
ATP binding	Hs	molecular function	758
nucleus	Hs	cellular component	758
nucleoplasm	Hs	cellular component	758
spliceosomal complex	Hs	cellular component	758
U4 snRNP	Hs	cellular component	758
U6 snRNP	Hs	cellular component	758
nucleolus	Hs	cellular component	758
cytoplasm	Hs	cellular component	758
RNA-dependent ATPase activity	Hs	molecular function	758
nuclear matrix	Hs	cellular component	758
nuclear speck	Hs	cellular component	758
hydrolase activity	Hs	molecular function	758
ATPase activity	Hs	molecular function	758
U6 snRNA binding	Hs	molecular function	758
U4 snRNA binding	Hs	molecular function	758
identical protein binding	Hs	molecular function	758
ATP-dependent protein binding	Hs	molecular function	758

GO (InterProScan)