Aniseed - Gene card

Gene Card

Best human hits

HOXA3; HOXB3; HOXD3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000614

Gene Model ID

KH2012:KH.C1.38

Location

KhC1:9897692..9914878

Transcript Models and Sequences

KH2012:KH.C1.38.v1.A.ND1-1
KH2012:KH.C1.38.v2.A.SL2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000006963
NCBI Reference Sequence	NM_001032497.1
NCBI Reference Sequence	XM_009864043.1

Collections

Gateway full ORF

1 result

Gene collection 1 (N. Satoh)

2 results

ciad065p10

Plate: R1CiGC06j23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

15 results

Ci-Hox3 -4200/174 REG00000047 [ regulatory_region (extended_promoter) ]
- Ci-Hox3 -3000/174 REG00000266 [ regulatory_region (extended_promoter) ]
- Ci-Hox3 -4200/-3000 REG00000267 [ regulatory_region (enhancer) ]

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
HTH_motif	PRINTS	Helix-turn-helix motif
Homeobox_dom	CDD	Homeobox domain
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	SMART	Homeobox domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	Pfam	Homeobox domain
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox_metazoa	PRINTS	Homeobox domain, metazoa

GOSlim

13 results

GO Term	Annotation Origin	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
nuclear body	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function
intracellular part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	145	1.78e-37
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	129	7.60e-32
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	145	1.78e-37
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	129	7.60e-32
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	145	1.78e-37
DNA binding	Hs	molecular function	145	1.78e-37
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	145	1.78e-37
protein binding	Hs	molecular function	145	1.78e-37
nucleus	Hs	cellular component	145	1.78e-37
nucleoplasm	Hs	cellular component	145	1.78e-37
aggresome	Hs	cellular component	145	1.78e-37
nuclear body	Hs	cellular component	145	1.78e-37
sequence-specific DNA binding	Hs	molecular function	145	1.78e-37
HMG box domain binding	Hs	molecular function	139	1.81e-35

GO (InterProScan)