Aniseed - Gene card

Gene Card

Best human hits

MUC4; SF3B1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000624

Gene Model ID

KH2012:KH.C1.389

Location

KhC1:4535462..4549058

Transcript Models and Sequences

KH2012:KH.C1.389.v1.A.ND1-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000002558
ENSEMBL	ENSCING00000023523
NCBI Reference Sequence	XM_018815777.1
NCBI Reference Sequence	XM_018815783.1

Collections

Gene collection 1 (N. Satoh)

3 results

citb074l22

Plate: R1CiGC46g02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
ARM-like	Gene3D	Armadillo-like helical
SF3b_su1	Pfam	Splicing factor 3B subunit 1
HEAT_type_2	ProSiteProfiles	HEAT, type 2
ARM-type_fold	SUPERFAMILY	Armadillo-type fold

GOSlim

15 results

GO Term	Annotation Origin	Type
RNA splicing, via transesterification reactions	Orthology	biological process
mRNA splicing, via spliceosome	Orthology	biological process
RNA binding	Orthology	molecular function
binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
nuclear speck	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
spliceosomal complex assembly	Hs	biological process
RNA splicing, via transesterification reactions	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U2 snRNP	Hs	cellular component
U12-type spliceosomal complex	Hs	cellular component
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
nuclear speck	Hs	cellular component
U11/U12 snRNP	Hs	cellular component
positive regulation of gene expression, epigenetic	Hs	biological process
U2-type prespliceosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component

GO (Blast)