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Gene Card

Best human hits

G3BP1; G3BP2; RBM34

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000655

Gene Model ID

KH2012:KH.C1.416

Location

KhC1:7266997..7272736

Transcript Models and Sequences

  KH2012:KH.C1.416.v1.A.SL1-1
KH2012:KH.C1.416.v2.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000004760
NCBI Reference Sequence XM_002126499.4
Collections

Gateway full ORF

2 results

cima898911

Plate: VES72_L12

cima8105822

Plate: VES73_M15

Gene collection 1 (N. Satoh)

1 result

cicl045e18

Plate: R1CiGC13i05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
RRM_dom ProSiteProfiles RNA recognition motif domain
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
NTF2 Pfam Nuclear transport factor 2
Nuclear_transport_factor_2_euk ProSiteProfiles Nuclear transport factor 2, eukaryote
Nuclear_transport_factor_2_euk CDD Nuclear transport factor 2, eukaryote
RRM_dom SMART RNA recognition motif domain
RRM_dom Pfam RNA recognition motif domain
NTF2-like_dom_sf SUPERFAMILY NTF2-like domain superfamily
G3BP2 PANTHER Ras GTPase-activating protein-binding protein 2

GOSlim

23 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleolus Blast cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
focal adhesion Orthology cellular component
membrane Orthology cellular component
hydrolase activity Orthology molecular function
negative regulation of canonical Wnt signaling pathway Orthology biological process
organelle organization Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
small GTPase mediated signal transduction Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
positive regulation of signal transduction Orthology biological process
organic substance transport Orthology biological process

GO (Orthology)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
ATP-dependent DNA helicase activity Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
nuclease activity Hs molecular function
endonuclease activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
focal adhesion Hs cellular component
Ras protein signal transduction Hs biological process
cytoplasmic stress granule Hs cellular component
membrane Hs cellular component
hydrolase activity Hs molecular function
receptor signaling complex scaffold activity Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
DNA duplex unwinding Hs biological process
stress granule assembly Hs biological process
mRNA transport Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process
nucleic acid phosphodiester bond hydrolysis Hs biological process

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 279 4.01e-89
nucleic acid binding Hs molecular function 291 8.40e-94
DNA binding Hs molecular function 279 4.01e-89
RNA binding Hs molecular function 291 8.40e-94
mRNA binding Hs molecular function 291 8.40e-94
ATP-dependent DNA helicase activity Hs molecular function 279 4.01e-89
ATP-dependent RNA helicase activity Hs molecular function 279 4.01e-89
helicase activity Hs molecular function 279 4.01e-89
nuclease activity Hs molecular function 279 4.01e-89
endonuclease activity Hs molecular function 279 4.01e-89
protein binding Hs molecular function 291 8.40e-94
ATP binding Hs molecular function 279 4.01e-89
nucleus Hs cellular component 279 4.01e-89
nucleolus Hs cellular component 54.7 5.08e-08
cytoplasm Hs cellular component 291 8.40e-94
cytosol Hs cellular component 291 8.40e-94
plasma membrane Hs cellular component 279 4.01e-89
focal adhesion Hs cellular component 279 4.01e-89
cytoplasmic stress granule Hs cellular component 279 4.01e-89
membrane Hs cellular component 279 4.01e-89
hydrolase activity Hs molecular function 279 4.01e-89
receptor signaling complex scaffold activity Hs molecular function 291 8.40e-94
intracellular ribonucleoprotein complex Hs cellular component 291 8.40e-94

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 1.28E-21
stress granule assembly PANTHER biological process 2.6E-113

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