Aniseed - Gene card

Gene Card

Best human hits

ALYREF; POLDIP3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000683

Gene Model ID

KH2012:KH.C1.442

Location

KhC1:9431947..9437308

Transcript Models and Sequences

KH2012:KH.C1.442.v1.A.SL1-1
KH2012:KH.C1.442.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000007054
NCBI Reference Sequence	XM_002119722.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cilv014j17

Plate: R1CiGC26m23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
RRM_dom	SMART	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
PDIP3	PANTHER	Polymerase delta-interacting protein 3
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
PDIP3_RRM	CDD	PDIP3, RNA recognition motif

GOSlim

21 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
nuclear speck	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transcription from RNA polymerase II promoter	Orthology	biological process
organic substance transport	Orthology	biological process
intracellular transport	Orthology	biological process
intracellular protein transport	Orthology	biological process
gene expression	Orthology	biological process
regulation of gene expression	Orthology	biological process
mRNA processing	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
transcription export complex	Hs	cellular component
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
termination of RNA polymerase II transcription	Hs	biological process
RNA export from nucleus	Hs	biological process
mRNA export from nucleus	Hs	biological process
regulation of translation	Hs	biological process
nuclear speck	Hs	cellular component
poly(A)+ mRNA export from nucleus	Hs	biological process
mRNA 3'-end processing	Hs	biological process
exon-exon junction complex	Hs	cellular component
cytoplasmic ribonucleoprotein granule	Hs	cellular component
positive regulation of translation	Hs	biological process
mRNA transport	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
transcription export complex	Hs	cellular component	128	6.77e-33
nucleic acid binding	Hs	molecular function	128	6.77e-33
RNA binding	Hs	molecular function	128	6.77e-33
protein binding	Hs	molecular function	128	6.77e-33
intracellular	Hs	cellular component	128	6.77e-33
nucleus	Hs	cellular component	128	6.77e-33
nucleoplasm	Hs	cellular component	128	6.77e-33
cytoplasm	Hs	cellular component	128	6.77e-33
cytosol	Hs	cellular component	128	6.77e-33
nuclear speck	Hs	cellular component	128	6.77e-33
exon-exon junction complex	Hs	cellular component	128	6.77e-33
cytoplasmic ribonucleoprotein granule	Hs	cellular component	128	6.77e-33

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	6.04E-14
RNA binding	PANTHER	molecular function	4.5E-81
mRNA export from nucleus	PANTHER	biological process	4.5E-81