Aniseed - Gene card

Gene Card

Best human hits

SRP14

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000758

Gene Model ID

KH2012:KH.C1.511

Location

KhC1:3343349..3345056

Transcript Models and Sequences

KH2012:KH.C1.511.v1.A.nonSL3-1
KH2012:KH.C1.511.v1.A.SL1-1
KH2012:KH.C1.511.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005156
NCBI Reference Sequence	XM_009864000.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb033m06

Plate: R1CiGC32a03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Signal_recog_particle_SRP14	PANTHER	Signal recognition particle, SRP14 subunit
Signal_recog_particle_SRP9/14	Gene3D	Signal recognition particle, SRP9/SRP14 subunit
Signal_recog_particle_SRP14	Pfam	Signal recognition particle, SRP14 subunit
Signal_recog_particle_SRP9/14	SUPERFAMILY	Signal recognition particle, SRP9/SRP14 subunit
Signal_recog_particle_SRP14	ProDom	Signal recognition particle, SRP14 subunit

GOSlim

17 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular region	Orthology	cellular component
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cotranslational protein targeting to membrane	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
protein targeting to ER	Orthology	biological process
extracellular exosome	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
binding	Orthology	molecular function
intracellular organelle part	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
endomembrane system	Orthology	cellular component
intracellular organelle lumen	Orthology	cellular component

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
signal recognition particle, endoplasmic reticulum targeting	Hs	cellular component
cytosol	Hs	cellular component
cotranslational protein targeting to membrane	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
7S RNA binding	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
endoplasmic reticulum signal peptide binding	Hs	molecular function
secretory granule lumen	Hs	cellular component
response to drug	Hs	biological process
protein targeting to ER	Hs	biological process
signal recognition particle	Hs	cellular component
extracellular exosome	Hs	cellular component
ficolin-1-rich granule lumen	Hs	cellular component

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	138	2.16e-43
protein binding	Hs	molecular function	138	2.16e-43
extracellular region	Hs	cellular component	138	2.16e-43
nucleus	Hs	cellular component	138	2.16e-43
cytoplasm	Hs	cellular component	138	2.16e-43
signal recognition particle, endoplasmic reticulum targeting	Hs	cellular component	138	2.16e-43
cytosol	Hs	cellular component	138	2.16e-43
7S RNA binding	Hs	molecular function	138	2.16e-43
intracellular ribonucleoprotein complex	Hs	cellular component	138	2.16e-43
endoplasmic reticulum signal peptide binding	Hs	molecular function	138	2.16e-43
secretory granule lumen	Hs	cellular component	138	2.16e-43
signal recognition particle	Hs	cellular component	138	2.16e-43
extracellular exosome	Hs	cellular component	138	2.16e-43
ficolin-1-rich granule lumen	Hs	cellular component	138	2.16e-43

GO (InterProScan)