Aniseed - Gene card

Gene Card

Best human hits

FBXL2; FBXL20; FBXL7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000795

Gene Model ID

KH2012:KH.C1.546

Location

KhC1:1633446..1645946

Transcript Models and Sequences

KH2012:KH.C1.546.v1.A.SL1-1
KH2012:KH.C1.546.v2.A.SL3-1
KH2012:KH.C1.546.v2.R.ND2-1
KH2012:KH.C1.546.v3.A.SL1-1
KH2012:KH.C1.546.v4.A.SL3-1
KH2012:KH.C1.546.v4.R.ND2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004763
NCBI Reference Sequence	XM_002131762.4
NCBI Reference Sequence	XM_004225447.3

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

ciht017p02

Plate: R1CiGC43j09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Leu-rich_rpt_Cys-con_subtyp	SMART	Leucine-rich repeat, cysteine-containing subtype
F-box_dom	SMART	F-box domain
Leu-rich_rpt	Pfam	Leucine-rich repeat
F-box_dom	ProSiteProfiles	F-box domain
F-box_dom	Pfam	F-box domain
LRR_dom_sf	Gene3D	Leucine-rich repeat domain superfamily

GOSlim

19 results

GO Term	Annotation Origin	Type
protein polyubiquitination	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
calmodulin binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
centrosome	Blast	cellular component
microtubule organizing center	Blast	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Blast	cellular component
cellular protein modification process	Orthology	biological process
proteolysis	Orthology	biological process
membrane	Orthology	cellular component
protein ubiquitination	Orthology	biological process
regulation of cellular metabolic process	Orthology	biological process
intracellular signal transduction	Orthology	biological process
regulation of signal transduction	Orthology	biological process
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
enzyme binding	Orthology	molecular function

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein polyubiquitination	Hs	biological process
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
calmodulin binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cellular protein modification process	Hs	biological process
proteolysis	Hs	biological process
ubiquitin-dependent protein catabolic process	Hs	biological process
protein monoubiquitination	Hs	biological process
regulation of autophagy	Hs	biological process
regulation of phosphatidylinositol 3-kinase signaling	Hs	biological process
membrane	Hs	cellular component
viral process	Hs	biological process
protein ubiquitination	Hs	biological process
SCF ubiquitin ligase complex	Hs	cellular component
protein phosphatase binding	Hs	molecular function
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Hs	biological process
phosphatidylinositol 3-kinase regulatory subunit binding	Hs	molecular function
post-translational protein modification	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin ligase complex	Hs	cellular component	167	2.82e-46
ubiquitin-protein transferase activity	Hs	molecular function	514	0.0
protein binding	Hs	molecular function	514	0.0
calmodulin binding	Hs	molecular function	483	2.13e-169
cytoplasm	Hs	cellular component	514	0.0
centrosome	Hs	cellular component	167	2.82e-46
microtubule organizing center	Hs	cellular component	167	2.82e-46
cytosol	Hs	cellular component	514	0.0
cytoskeleton	Hs	cellular component	167	2.82e-46
membrane	Hs	cellular component	483	2.13e-169
SCF ubiquitin ligase complex	Hs	cellular component	483	2.13e-169
protein phosphatase binding	Hs	molecular function	483	2.13e-169
phosphatidylinositol 3-kinase regulatory subunit binding	Hs	molecular function	483	2.13e-169

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	Pfam	molecular function	2.6E-12