Aniseed - Gene card

Gene Card

Best human hits

PABPC1; PABPC4; SF3B4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000817

Gene Model ID

KH2012:KH.C1.567

Location

KhC1:2609983..2614921

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000002337
NCBI Reference Sequence	XM_002119314.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg026h20

Plate: R1CiGC19d22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
SF3B4_RRM2	CDD	SF3B4, RNA recognition motif 2
SF3B4_RRM1	CDD	SF3B4, RNA recognition motif 1
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	SMART	RNA recognition motif domain
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

20 results

GO Term	Annotation Origin	Type
RNA splicing, via transesterification reactions	Orthology	biological process
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
focal adhesion	Blast	cellular component
mRNA processing	Orthology	biological process
protein C-terminus binding	Blast	molecular function
RNA splicing	Orthology	biological process
membrane	Blast	cellular component
extracellular exosome	Blast	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA splicing, via transesterification reactions	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U12-type spliceosomal complex	Hs	cellular component
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
positive regulation of mRNA splicing, via spliceosome	Hs	biological process

GO (Blast)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	405	1.54e-140
RNA binding	Hs	molecular function	405	1.54e-140
mRNA binding	Hs	molecular function	124	6.60e-31
mRNA 3'-UTR binding	Hs	molecular function	119	2.29e-29
protein binding	Hs	molecular function	405	1.54e-140
nucleus	Hs	cellular component	405	1.54e-140
nucleoplasm	Hs	cellular component	405	1.54e-140
spliceosomal complex	Hs	cellular component	405	1.54e-140
U12-type spliceosomal complex	Hs	cellular component	405	1.54e-140
cytoplasm	Hs	cellular component	124	6.60e-31
cytosol	Hs	cellular component	124	6.60e-31
focal adhesion	Hs	cellular component	119	2.29e-29
protein C-terminus binding	Hs	molecular function	119	2.29e-29
poly(A) binding	Hs	molecular function	124	6.60e-31
poly(U) RNA binding	Hs	molecular function	124	6.60e-31
translation activator activity	Hs	molecular function	119	2.29e-29
cytoplasmic stress granule	Hs	cellular component	124	6.60e-31
membrane	Hs	cellular component	119	2.29e-29
intracellular ribonucleoprotein complex	Hs	cellular component	124	6.60e-31
cytoplasmic ribonucleoprotein granule	Hs	cellular component	119	2.29e-29
extracellular exosome	Hs	cellular component	119	2.29e-29
catalytic step 2 spliceosome	Hs	cellular component	119	2.29e-29

GO (InterProScan)