Login
Help

GENE CARD

Submit your Data

  1. > 
  2. Gene 'Phfumi.CG.MTP2014.S2...' > 
  3. > 
  4. > 

Gene Card

Best human hits

DDX10; DDX18; DDX55

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00000953

Gene Model ID

KH2012:KH.C1.690

Location

KhC1:8513214..8515627

Transcript Models and Sequences

  KH2012:KH.C1.690.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000021618
NCBI Reference Sequence XM_009864186.2
Collections

Gateway full ORF

1 result

cien103404

Plate: VES86_E12

Gene collection 1 (N. Satoh)

2 results

cieg037n06

Plate: R1CiGC21f03

cieg046c09

Plate: R1CiGC23a07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
Helicase_C CDD Helicase, C-terminal
DUF4217 SMART Domain of unknown function DUF4217
DUF4217 Pfam Domain of unknown function DUF4217
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_C Pfam Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C SMART Helicase, C-terminal
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
RNA-helicase_DEAD-box_CS ProSitePatterns ATP-dependent RNA helicase DEAD-box, conserved site

GOSlim

15 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Blast molecular function
ATP binding Orthology molecular function
nucleus Blast cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Blast cellular component
membrane Blast cellular component
hydrolase activity Orthology molecular function
nucleoside-triphosphatase activity Orthology molecular function
RNA metabolic process Orthology biological process
head development Orthology biological process
intracellular non-membrane-bounded organelle Blast cellular component

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
ATP binding Hs molecular function
nucleolus Hs cellular component
cytoplasm Hs cellular component
RNA secondary structure unwinding Hs biological process
hydrolase activity Hs molecular function
anterior head development Hs biological process

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 617 0.0
nucleic acid binding Hs molecular function 617 0.0
RNA binding Hs molecular function 617 0.0
RNA helicase activity Hs molecular function 617 0.0
ATP-dependent RNA helicase activity Hs molecular function 617 0.0
helicase activity Hs molecular function 617 0.0
protein binding Hs molecular function 363 8.16e-116
ATP binding Hs molecular function 617 0.0
nucleus Hs cellular component 363 8.16e-116
chromosome Hs cellular component 363 8.16e-116
nucleolus Hs cellular component 617 0.0
cytoplasm Hs cellular component 617 0.0
cytosol Hs cellular component 286 5.03e-87
membrane Hs cellular component 363 8.16e-116
hydrolase activity Hs molecular function 617 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 7.8E-45
ATP binding Pfam molecular function 7.8E-45

Back to Top