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GENE CARD

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Gene Card

Best human hits

DHX36; DHX37; DHX40

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001023

Gene Model ID

KH2012:KH.C1.753

Location

KhC1:8146644..8160363

Transcript Models and Sequences

  KH2012:KH.C1.753.v1.A.ND1-1
KH2012:KH.C1.753.v1.A.nonSL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000001153
NCBI Reference Sequence XM_002123949.4
Collections

Gateway full ORF

3 results

cien59520

Plate: VES79_F15

cien62450

Plate: VES80_B02

cien172116

Plate: VES96_K22

Gene collection 1 (N. Satoh)

3 results

cieg001o06

Plate: R1CiGC15l09

cieg004k18

Plate: R1CiGC16i03

ciad044l05

Plate: R1CiGC04d20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C Pfam Helicase, C-terminal
Helicase_C SMART Helicase, C-terminal
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
DUF1605 Pfam Domain of unknown function DUF1605
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase-assoc_dom SMART Helicase-associated domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase-assoc_dom Pfam Helicase-associated domain
AAA+_ATPase SMART AAA+ ATPase domain
Helicase_C ProSiteProfiles Helicase, C-terminal
DNA/RNA_helicase_DEAH_CS ProSitePatterns DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site

GOSlim

23 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nucleic acid binding Orthology molecular function
DNA binding Blast molecular function
RNA binding Orthology molecular function
protein binding Blast molecular function
ATP binding Orthology molecular function
nucleus Blast cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Blast cellular component
RNA processing Orthology biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Orthology molecular function
transcription regulatory region DNA binding Blast molecular function
extracellular exosome Blast cellular component
nucleoside-triphosphatase activity Orthology molecular function
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear part Blast cellular component
macromolecular complex Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
ATP binding Hs molecular function
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
rRNA processing Hs biological process
RNA processing Hs biological process
hydrolase activity Hs molecular function

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 956 0.0
chromosome, telomeric region Hs cellular component 231 2.06e-62
core promoter binding Hs molecular function 231 2.06e-62
G-quadruplex RNA binding Hs molecular function 231 2.06e-62
nucleic acid binding Hs molecular function 956 0.0
DNA binding Hs molecular function 231 2.06e-62
single-stranded DNA binding Hs molecular function 231 2.06e-62
RNA binding Hs molecular function 956 0.0
double-stranded RNA binding Hs molecular function 231 2.06e-62
ATP-dependent RNA helicase activity Hs molecular function 956 0.0
helicase activity Hs molecular function 956 0.0
protein binding Hs molecular function 231 2.06e-62
ATP binding Hs molecular function 956 0.0
nucleus Hs cellular component 231 2.06e-62
nucleoplasm Hs cellular component 956 0.0
spliceosomal complex Hs cellular component 317 1.49e-93
chromosome Hs cellular component 231 2.06e-62
nucleolus Hs cellular component 956 0.0
cytoplasm Hs cellular component 956 0.0
cytosol Hs cellular component 231 2.06e-62
DNA-dependent ATPase activity Hs molecular function 231 2.06e-62
membrane Hs cellular component 231 2.06e-62
integral component of membrane Hs cellular component 231 2.06e-62
hydrolase activity Hs molecular function 956 0.0
histone deacetylase binding Hs molecular function 231 2.06e-62
transcription regulatory region DNA binding Hs molecular function 231 2.06e-62
G-quadruplex DNA binding Hs molecular function 231 2.06e-62
telomerase RNA binding Hs molecular function 231 2.06e-62
extracellular exosome Hs cellular component 231 2.06e-62

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 1.2E-8
helicase activity SMART molecular function 4.9E-20
ATP binding Pfam molecular function 1.2E-8

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