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GENE CARD

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Gene Card

Best human hits

ZEB1; ZEB2; ZNF22

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001049

Gene Model ID

KH2012:KH.C1.777

Location

KhC1:10017370..10032348

Transcript Models and Sequences

  KH2012:KH.C1.777.v1.A.SL1-1
KH2012:KH.C1.777.v2.A.nonSL3-1
KH2012:KH.C1.777.v2.R.ND2-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000006930
NCBI Reference Sequence NM_001078405.1
NCBI Reference Sequence XM_018815779.1
Collections

Gateway full ORF

2 results

cien146887

Plate: VES93_F06

cien155417

Plate: VES94_A08

Gene collection 1 (N. Satoh)

2 results

citb010p16

Plate: R1CiGC30o13

ciad008m15

Plate: R1CiGC01j12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type SMART Zinc finger C2H2-type

GOSlim

26 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Blast biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription coactivator activity Blast molecular function
transcription corepressor activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytosol Blast cellular component
transcription factor binding Blast molecular function
zinc ion binding Blast molecular function
sequence-specific DNA binding Blast molecular function
metal ion binding Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
intracellular part Blast cellular component
macromolecular complex Blast cellular component
dephosphorylation Blast biological process
enzyme binding Blast molecular function
hydrolase activity Blast molecular function
enzyme regulator activity Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 173 6.45e-44
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 175 1.23e-44
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 173 6.45e-44
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 175 1.23e-44
nucleic acid binding Hs molecular function 175 1.23e-44
DNA binding Hs molecular function 175 1.23e-44
chromatin binding Hs molecular function 175 1.23e-44
transcription factor activity, sequence-specific DNA binding Hs molecular function 175 1.23e-44
transcription coactivator activity Hs molecular function 175 1.23e-44
transcription corepressor activity Hs molecular function 175 1.23e-44
protein binding Hs molecular function 175 1.23e-44
nucleus Hs cellular component 175 1.23e-44
nucleoplasm Hs cellular component 175 1.23e-44
transcription factor complex Hs cellular component 175 1.23e-44
nucleolus Hs cellular component 173 6.45e-44
cytosol Hs cellular component 175 1.23e-44
transcription factor binding Hs molecular function 175 1.23e-44
zinc ion binding Hs molecular function 175 1.23e-44
phosphatase regulator activity Hs molecular function 173 6.45e-44
sequence-specific DNA binding Hs molecular function 173 6.45e-44
metal ion binding Hs molecular function 175 1.23e-44
R-SMAD binding Hs molecular function 173 6.45e-44
E-box binding Hs molecular function 175 1.23e-44

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 5.1E-4

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