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Gene Card

Best human hits

COPS4; PSMD12

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001112

Gene Model ID

KH2012:KH.C1.834

Location

KhC1:3194572..3196378

Transcript Models and Sequences

  KH2012:KH.C1.834.v1.A.nonSL2-1
KH2012:KH.C1.834.v1.A.nonSL3-1
KH2012:KH.C1.834.v1.A.nonSL4-1
KH2012:KH.C1.834.v1.A.nonSL5-1
KH2012:KH.C1.834.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005232
NCBI Reference Sequence XM_002124437.4
Collections

Gateway full ORF

2 results

cien41204

Plate: VES76_F22

cien115052

Plate: VES88_G07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
PSMD12 PANTHER 26S Proteasome non-ATPase regulatory subunit 12
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
PCI_dom SMART Proteasome component (PCI) domain
PCI_dom Pfam Proteasome component (PCI) domain

GOSlim

41 results

GO Term Annotation Origin Type
protein polyubiquitination Orthology biological process
protein binding Orthology molecular function
extracellular region Orthology cellular component
nucleus Blast cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
membrane Orthology cellular component
nuclear speck Blast cellular component
cell junction Blast cellular component
cytoplasmic vesicle Orthology cellular component
synapse Blast cellular component
transmembrane transport Orthology biological process
extracellular exosome Orthology cellular component
negative regulation of canonical Wnt signaling pathway Orthology biological process
positive regulation of canonical Wnt signaling pathway Orthology biological process
intracellular signal transduction Orthology biological process
protein phosphorylation Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
G2/M transition of mitotic cell cycle Orthology biological process
peptidase activity, acting on L-amino acid peptides Orthology molecular function
proteolysis Orthology biological process
nuclear lumen Orthology cellular component
cytokine-mediated signaling pathway Orthology biological process
intracellular organelle part Orthology cellular component
endomembrane system Orthology cellular component
intracellular organelle lumen Orthology cellular component
transcription factor activity, sequence-specific DNA binding Orthology molecular function
cell surface receptor signaling pathway Orthology biological process
immune response Orthology biological process
mRNA catabolic process Orthology biological process
cellular protein modification process Orthology biological process
cell-cell signaling Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
immune system process Orthology biological process
cell differentiation Orthology biological process
synapse part Blast cellular component
neuron part Blast cellular component
nuclear part Blast cellular component

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
MAPK cascade Hs biological process
protein polyubiquitination Hs biological process
proteasome complex Hs cellular component
protein binding Hs molecular function
extracellular region Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
proteasome regulatory particle Hs cellular component
proteasome regulatory particle, lid subcomplex Hs cellular component
negative regulation of G2/M transition of mitotic cell cycle Hs biological process
membrane Hs cellular component
protein deubiquitination Hs biological process
proteasome accessory complex Hs cellular component
anaphase-promoting complex-dependent catabolic process Hs biological process
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Hs biological process
nuclear proteasome complex Hs cellular component
tumor necrosis factor-mediated signaling pathway Hs biological process
secretory granule lumen Hs cellular component
NIK/NF-kappaB signaling Hs biological process
Fc-epsilon receptor signaling pathway Hs biological process
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
regulation of mRNA stability Hs biological process
post-translational protein modification Hs biological process
T cell receptor signaling pathway Hs biological process
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle Hs biological process
transmembrane transport Hs biological process
Wnt signaling pathway, planar cell polarity pathway Hs biological process
extracellular exosome Hs cellular component
interleukin-1-mediated signaling pathway Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process
regulation of hematopoietic stem cell differentiation Hs biological process
ficolin-1-rich granule lumen Hs cellular component

GO (Blast)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
proteasome complex Hs cellular component 617 0.0
protein binding Hs molecular function 617 0.0
extracellular region Hs cellular component 617 0.0
nucleus Hs cellular component 57.4 8.44e-09
nucleoplasm Hs cellular component 617 0.0
cytoplasm Hs cellular component 617 0.0
cytosol Hs cellular component 617 0.0
proteasome regulatory particle Hs cellular component 617 0.0
synaptic vesicle Hs cellular component 57.4 8.44e-09
COP9 signalosome Hs cellular component 57.4 8.44e-09
proteasome regulatory particle, lid subcomplex Hs cellular component 617 0.0
membrane Hs cellular component 617 0.0
nuclear speck Hs cellular component 57.4 8.44e-09
NEDD8-specific protease activity Hs molecular function 57.4 8.44e-09
proteasome accessory complex Hs cellular component 617 0.0
cell junction Hs cellular component 57.4 8.44e-09
cytoplasmic vesicle Hs cellular component 57.4 8.44e-09
nuclear proteasome complex Hs cellular component 617 0.0
secretory granule lumen Hs cellular component 617 0.0
synapse Hs cellular component 57.4 8.44e-09
extracellular exosome Hs cellular component 617 0.0
ficolin-1-rich granule lumen Hs cellular component 617 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Pfam molecular function 1.6E-21

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