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GENE CARD

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Gene Card

Best human hits

RBMXL3; SNRNP35; SNRNP70

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001288

Gene Model ID

KH2012:KH.C1.994

Location

KhC1:4032950..4037896

Transcript Models and Sequences

  KH2012:KH.C1.994.v1.A.SL1-1
KH2012:KH.C1.994.v2.A.SL1-2

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000006015
NCBI Reference Sequence XM_002131759.4
NCBI Reference Sequence XM_009863924.2
Collections

Gateway full ORF

2 results

cien38980

Plate: VES76_H12

cima871610

Plate: VES66_E20

Gene collection 1 (N. Satoh)

2 results

cieg055a16

Plate: R1CiGC24g10

cilv029j24

Plate: R1CiGC27f03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
RRM_dom SMART RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
snRNP70_RRM CDD snRNP70, RNA recognition motif
RRM_dom Pfam RNA recognition motif domain
U1snRNP70_N Pfam U1 small nuclear ribonucleoprotein of 70kDa N-terminal
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain

GOSlim

19 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Blast cellular component
cytoplasm Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
nucleoside-triphosphatase activity Orthology molecular function
regulation of gene expression Orthology biological process
positive regulation of gene expression Orthology biological process
response to lipid Orthology biological process
cellular response to organic substance Orthology biological process
macromolecular complex binding Orthology molecular function

GO (Orthology)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
commitment complex Hs cellular component
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
U1 snRNP Hs cellular component
cytoplasm Hs cellular component
mRNA processing Hs biological process
RNA splicing Hs biological process
nuclear speck Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
U1 snRNA binding Hs molecular function
regulation of ATPase activity Hs biological process
regulation of RNA splicing Hs biological process
positive regulation of mRNA splicing, via spliceosome Hs biological process
U2-type prespliceosome Hs cellular component
precatalytic spliceosome Hs cellular component
cellular response to retinoic acid Hs biological process
cellular response to tumor necrosis factor Hs biological process
cellular response to transforming growth factor beta stimulus Hs biological process
U1 snRNP binding Hs molecular function

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
commitment complex Hs cellular component 253 1.77e-79
nucleic acid binding Hs molecular function 253 1.77e-79
RNA binding Hs molecular function 253 1.77e-79
mRNA binding Hs molecular function 253 1.77e-79
protein binding Hs molecular function 253 1.77e-79
nucleus Hs cellular component 253 1.77e-79
nucleoplasm Hs cellular component 253 1.77e-79
spliceosomal complex Hs cellular component 253 1.77e-79
U1 snRNP Hs cellular component 253 1.77e-79
U12-type spliceosomal complex Hs cellular component 99.8 1.02e-23
nucleolus Hs cellular component 99.8 1.02e-23
cytoplasm Hs cellular component 253 1.77e-79
nuclear speck Hs cellular component 253 1.77e-79
snRNA binding Hs molecular function 99.8 1.02e-23
intracellular ribonucleoprotein complex Hs cellular component 253 1.77e-79
U1 snRNA binding Hs molecular function 253 1.77e-79
U2-type prespliceosome Hs cellular component 253 1.77e-79
precatalytic spliceosome Hs cellular component 253 1.77e-79
U1 snRNP binding Hs molecular function 253 1.77e-79

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 3.22E-30
U1 snRNA binding CDD molecular function 1.05052E-54

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