Aniseed - Gene card

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000020699
ENSEMBL	ENSCING00000024160
NCBI Reference Sequence	XM_018816551.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg010d01

Plate: R1CiGC17m09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
Bromodomain	SMART	Bromodomain
Bromodomain	Pfam	Bromodomain
Bromodomain	PRINTS	Bromodomain
ATPase_AAA_CS	ProSitePatterns	ATPase, AAA-type, conserved site
Bromodomain-like_sf	Gene3D	Bromodomain-like superfamily
Bromodomain-like_sf	SUPERFAMILY	Bromodomain-like superfamily
ANCCA	PANTHER	ATPase family AAA domain-containing protein 2
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Bromodomain	ProSiteProfiles	Bromodomain
ATPase_AAA_core	Pfam	ATPase, AAA-type, core
AAA+_ATPase	SMART	AAA+ ATPase domain

GOSlim

47 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
RNA binding	Blast	molecular function
receptor binding	Blast	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
extracellular region	Blast	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Blast	cellular component
endoplasmic reticulum	Blast	cellular component
endoplasmic reticulum membrane	Blast	cellular component
cytosol	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
hydrolase activity	Orthology	molecular function
ubiquitin protein ligase binding	Blast	molecular function
macromolecular complex	Blast	cellular component
identical protein binding	Blast	molecular function
myelin sheath	Blast	cellular component
intracellular membrane-bounded organelle	Blast	cellular component
ubiquitin-like protein ligase binding	Blast	molecular function
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
perinuclear region of cytoplasm	Blast	cellular component
extracellular exosome	Orthology	cellular component
organelle organization	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
negative regulation of transcription, DNA-templated	Orthology	biological process
intracellular part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
binding	Blast	molecular function
enzyme binding	Blast	molecular function
intracellular organelle part	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
endomembrane system	Blast	cellular component
intracellular organelle lumen	Blast	cellular component
lysosome	Blast	cellular component
vacuolar part	Blast	cellular component
enzyme activator activity	Blast	molecular function
positive regulation of hydrolase activity	Blast	biological process
peptidase activity, acting on L-amino acid peptides	Blast	molecular function
anion binding	Blast	molecular function
adenyl ribonucleotide binding	Blast	molecular function
macromolecular complex binding	Blast	molecular function
cytoplasmic part	Blast	cellular component

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
chromatin binding	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
chromatin organization	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
hydrolase activity	Hs	molecular function
ATPase activity	Hs	molecular function
negative regulation of chromatin silencing	Hs	biological process
histone binding	Hs	molecular function
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
extracellular exosome	Hs	cellular component
lysine-acetylated histone binding	Hs	molecular function

GO (Blast)

45 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	540	2.19e-170
proteasome complex	Hs	cellular component	218	3.55e-59
chromatin binding	Hs	molecular function	540	2.19e-170
RNA binding	Hs	molecular function	218	3.55e-59
receptor binding	Hs	molecular function	218	3.55e-59
protein binding	Hs	molecular function	540	2.19e-170
ATP binding	Hs	molecular function	540	2.19e-170
extracellular region	Hs	cellular component	218	3.55e-59
nucleus	Hs	cellular component	540	2.19e-170
nucleoplasm	Hs	cellular component	540	2.19e-170
cytoplasm	Hs	cellular component	218	3.55e-59
endoplasmic reticulum	Hs	cellular component	218	3.55e-59
endoplasmic reticulum membrane	Hs	cellular component	218	3.55e-59
lipid droplet	Hs	cellular component	218	3.55e-59
cytosol	Hs	cellular component	218	3.55e-59
lipid binding	Hs	molecular function	218	3.55e-59
hydrolase activity	Hs	molecular function	508	5.42e-159
ATPase activity	Hs	molecular function	540	2.19e-170
protein phosphatase binding	Hs	molecular function	218	3.55e-59
protein domain specific binding	Hs	molecular function	218	3.55e-59
polyubiquitin modification-dependent protein binding	Hs	molecular function	218	3.55e-59
ubiquitin protein ligase binding	Hs	molecular function	218	3.55e-59
macromolecular complex	Hs	cellular component	218	3.55e-59
VCP-NPL4-UFD1 AAA ATPase complex	Hs	cellular component	218	3.55e-59
secretory granule lumen	Hs	cellular component	218	3.55e-59
azurophil granule lumen	Hs	cellular component	218	3.55e-59
deubiquitinase activator activity	Hs	molecular function	218	3.55e-59
site of double-strand break	Hs	cellular component	218	3.55e-59
K48-linked polyubiquitin modification-dependent protein binding	Hs	molecular function	218	3.55e-59
Derlin-1 retrotranslocation complex	Hs	cellular component	218	3.55e-59
MHC class I protein binding	Hs	molecular function	218	3.55e-59
histone binding	Hs	molecular function	508	5.42e-159
identical protein binding	Hs	molecular function	218	3.55e-59
myelin sheath	Hs	cellular component	218	3.55e-59
intracellular membrane-bounded organelle	Hs	cellular component	218	3.55e-59
ADP binding	Hs	molecular function	218	3.55e-59
ubiquitin-like protein ligase binding	Hs	molecular function	218	3.55e-59
perinuclear region of cytoplasm	Hs	cellular component	218	3.55e-59
extracellular exosome	Hs	cellular component	508	5.42e-159
lysine-acetylated histone binding	Hs	molecular function	540	2.19e-170
BAT3 complex binding	Hs	molecular function	218	3.55e-59
ficolin-1-rich granule lumen	Hs	cellular component	218	3.55e-59
ATPase complex	Hs	cellular component	218	3.55e-59
ubiquitin-specific protease binding	Hs	molecular function	218	3.55e-59
VCP-NSFL1C complex	Hs	cellular component	218	3.55e-59

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
protein binding	Gene3D	molecular function	5.6E-34
ATP binding	Pfam	molecular function	8.4E-42
chromatin organization	PANTHER	biological process	5.6E-277
regulation of transcription, DNA-templated	PANTHER	biological process	5.6E-277
ATPase activity	PANTHER	molecular function	5.6E-277

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences