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Gene Card

Best human hits

ERG; FEV; FLI1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001347

Gene Model ID

KH2012:KH.C10.148

Location

KhC10:4377433..4387939

Transcript Models and Sequences

  KH2012:KH.C10.148.v1.A.nonSL1-1
KH2012:KH.C10.148.v1.A.nonSL3-1
KH2012:KH.C10.148.v1.A.nonSL5-1
KH2012:KH.C10.148.v1.A.SL6-1
KH2012:KH.C10.148.v1.R.nonSL2-1
KH2012:KH.C10.148.v1.R.nonSL4-1
KH2012:KH.C10.148.v2.A.nonSL1-1
KH2012:KH.C10.148.v2.A.nonSL3-1
KH2012:KH.C10.148.v2.A.nonSL5-1
KH2012:KH.C10.148.v2.A.SL6-1
KH2012:KH.C10.148.v2.R.nonSL2-1
KH2012:KH.C10.148.v2.R.nonSL4-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000007752
NCBI Reference Sequence NM_001128860.1
Collections

Gateway full ORF

2 results

cien54747

Plate: VES78_H20

cien179346

Plate: VES97_F24

Gene collection 1 (N. Satoh)

1 result

citb055o21

Plate: R1CiGC45l18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
Ets_dom PRINTS Ets domain
SAM/pointed_sf SUPERFAMILY Sterile alpha motif/pointed domain superfamily
Ets_dom Pfam Ets domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Pointed_dom SMART Pointed domain
Ets_dom ProSitePatterns Ets domain
Pointed_dom ProSiteProfiles Pointed domain
Pointed_dom Pfam Pointed domain
Ets_dom SMART Ets domain
Ets_dom ProSiteProfiles Ets domain

GOSlim

16 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription corepressor activity Blast molecular function
signal transducer activity Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
nuclear body Blast cellular component
nuclear speck Blast cellular component
sequence-specific DNA binding Blast molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 292 6.93e-92
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 292 6.93e-92
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 292 6.93e-92
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 292 6.93e-92
DNA binding Hs molecular function 292 6.93e-92
chromatin binding Hs molecular function 292 6.93e-92
transcription factor activity, sequence-specific DNA binding Hs molecular function 292 6.93e-92
transcription corepressor activity Hs molecular function 184 1.01e-53
signal transducer activity Hs molecular function 207 8.78e-60
protein binding Hs molecular function 292 6.93e-92
nucleus Hs cellular component 292 6.93e-92
cytoplasm Hs cellular component 207 8.78e-60
cytosol Hs cellular component 292 6.93e-92
nuclear body Hs cellular component 292 6.93e-92
nuclear speck Hs cellular component 184 1.01e-53
intracellular ribonucleoprotein complex Hs cellular component 207 8.78e-60
sequence-specific DNA binding Hs molecular function 292 6.93e-92

GO (InterProScan)

4 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 5.3E-59
nucleus Pfam cellular component 8.9E-19
regulation of transcription, DNA-templated SMART biological process 5.3E-59
sequence-specific DNA binding SMART molecular function 5.3E-59

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