Aniseed - Gene card

GENE CARD

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Gene 'Phmamm.CG.MTP2014.S1...' >

Gene Card

Best human hits

SLC25A20; SLC25A29; SLC25A45

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001410

Gene Model ID

KH2012:KH.C10.208

Location

KhC10:2119920..2123285

Transcript Models and Sequences

KH2012:KH.C10.208.v1.A.nonSL10-1
KH2012:KH.C10.208.v1.A.nonSL1-1
KH2012:KH.C10.208.v1.A.nonSL11-1
KH2012:KH.C10.208.v1.A.nonSL12-1
KH2012:KH.C10.208.v1.A.nonSL13-1
KH2012:KH.C10.208.v1.A.nonSL14-1
KH2012:KH.C10.208.v1.A.nonSL15-1
KH2012:KH.C10.208.v1.A.nonSL16-1
KH2012:KH.C10.208.v1.A.nonSL17-1
KH2012:KH.C10.208.v1.A.nonSL19-1
KH2012:KH.C10.208.v1.A.nonSL20-1
KH2012:KH.C10.208.v1.A.nonSL21-1
KH2012:KH.C10.208.v1.A.nonSL23-1
KH2012:KH.C10.208.v1.A.nonSL24-1
KH2012:KH.C10.208.v1.A.nonSL25-1
KH2012:KH.C10.208.v1.A.nonSL26-1
KH2012:KH.C10.208.v1.A.nonSL27-1
KH2012:KH.C10.208.v1.A.nonSL28-1
KH2012:KH.C10.208.v1.A.nonSL29-1
KH2012:KH.C10.208.v1.A.nonSL30-1
KH2012:KH.C10.208.v1.A.nonSL5-1
KH2012:KH.C10.208.v1.A.nonSL6-1
KH2012:KH.C10.208.v1.A.nonSL7-1
KH2012:KH.C10.208.v1.A.nonSL8-1
KH2012:KH.C10.208.v1.A.nonSL9-1
KH2012:KH.C10.208.v1.A.SL1-1
KH2012:KH.C10.208.v1.A.SL18-1
KH2012:KH.C10.208.v1.A.SL2-1
KH2012:KH.C10.208.v1.A.SL22-1
KH2012:KH.C10.208.v1.A.SL3-1
KH2012:KH.C10.208.v1.A.SL4-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000008209
NCBI Reference Sequence	XM_002119571.3
NCBI Reference Sequence	XM_004226500.3

Collections

Gateway full ORF

2 results

cien108429

Plate: VES87_K06

cien211449

Plate: VES103_H01

Gene collection 1 (N. Satoh)

1 result

cieg018a08

Plate: R1CiGC18e04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Mitochondrial_sb/sol_carrier	ProSiteProfiles	Mitochondrial substrate/solute carrier
Mt_carrier_dom_sf	Gene3D	Mitochondrial carrier domain superfamily
Mit_carrier	PRINTS	Mitochondrial carrier protein
Mitochondrial_sb/sol_carrier	Pfam	Mitochondrial substrate/solute carrier
Mt_carrier_dom_sf	SUPERFAMILY	Mitochondrial carrier domain superfamily

GOSlim

9 results

GO Term	Annotation Origin	Type
mitochondrion	Blast	cellular component
mitochondrial inner membrane	Blast	cellular component
cytosol	Blast	cellular component
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
transmembrane transport	Blast	biological process
organic substance transport	Blast	biological process
cation transport	Blast	biological process
ion transport	Blast	biological process

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
high-affinity arginine transmembrane transporter activity	Hs	molecular function	167	5.90e-50
high-affinity lysine transmembrane transporter activity	Hs	molecular function	167	5.90e-50
carnitine:acyl carnitine antiporter activity	Hs	molecular function	366	7.31e-128
mitochondrion	Hs	cellular component	366	7.31e-128
mitochondrial inner membrane	Hs	cellular component	366	7.31e-128
cytosol	Hs	cellular component	366	7.31e-128
amino acid transmembrane transporter activity	Hs	molecular function	167	5.90e-50
basic amino acid transmembrane transporter activity	Hs	molecular function	167	5.90e-50
carnitine transmembrane transporter activity	Hs	molecular function	366	7.31e-128
acyl carnitine transmembrane transporter activity	Hs	molecular function	366	7.31e-128
membrane	Hs	cellular component	366	7.31e-128
integral component of membrane	Hs	cellular component	366	7.31e-128
transmembrane transporter activity	Hs	molecular function	173	2.14e-52

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
transmembrane transport	PRINTS	biological process	2.9E-5

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