Aniseed - Gene card

Gene Card

Best human hits

HNRNPDL; MSI1; MSI2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001472

Gene Model ID

KH2012:KH.C10.264

Location

KhC10:4429783..4445969

Transcript Models and Sequences

KH2012:KH.C10.264.v1.A.SL2-1
KH2012:KH.C10.264.v2.A.SL1-1
KH2012:KH.C10.264.v3.A.SL3-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cilv081d21

Plate: R1CiGC44h23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

1 results

Cirobu.REG.KH2012.C10:4438567-4440059|Msi REG00000987 [ regulatory_region (enhancer) ]

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
RRM_dom	Pfam	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
MSI_RRM2	CDD	RNA-binding protein Musashi homologue, RNA recognition motif 2
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain

GOSlim

13 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
DNA binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
cytosol	Blast	cellular component
nervous system development	Orthology	biological process
identical protein binding	Orthology	molecular function
extracellular exosome	Blast	cellular component
macromolecular complex	Orthology	cellular component
cell development	Orthology	biological process

GO (Orthology)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
single-stranded RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
polysome	Hs	cellular component
nervous system development	Hs	biological process
poly(U) RNA binding	Hs	molecular function
identical protein binding	Hs	molecular function
stem cell development	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	304	1.52e-101
DNA binding	Hs	molecular function	172	1.89e-49
RNA binding	Hs	molecular function	304	1.52e-101
single-stranded RNA binding	Hs	molecular function	304	1.52e-101
protein binding	Hs	molecular function	304	1.52e-101
nucleus	Hs	cellular component	296	8.12e-98
nucleoplasm	Hs	cellular component	172	1.89e-49
cytoplasm	Hs	cellular component	304	1.52e-101
cytosol	Hs	cellular component	172	1.89e-49
polysome	Hs	cellular component	304	1.52e-101
poly(U) RNA binding	Hs	molecular function	304	1.52e-101
intracellular ribonucleoprotein complex	Hs	cellular component	172	1.89e-49
identical protein binding	Hs	molecular function	296	8.12e-98
extracellular exosome	Hs	cellular component	172	1.89e-49

GO (InterProScan)