Aniseed - Gene card

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	Pfam	Homeobox domain
Homeobox_dom	CDD	Homeobox domain
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	SMART	Homeobox domain

GOSlim

45 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II regulatory region DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription coactivator activity	Blast	molecular function
protein binding	Orthology	molecular function
intracellular	Blast	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
axon guidance	Orthology	biological process
brain development	Orthology	biological process
transcription factor binding	Blast	molecular function
positive regulation of gene expression	Orthology	biological process
enzyme binding	Orthology	molecular function
cell differentiation	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Orthology	molecular function
negative regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
cell migration	Orthology	biological process
generation of neurons	Orthology	biological process
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
phosphate-containing compound metabolic process	Orthology	biological process
organic substance metabolic process	Orthology	biological process
anatomical structure development	Orthology	biological process
response to organic substance	Orthology	biological process
animal organ development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
neuron differentiation	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
cellular response to organic substance	Orthology	biological process
neurogenesis	Orthology	biological process
central nervous system development	Orthology	biological process

GO (Orthology)

51 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
RNA polymerase II regulatory region DNA binding	Hs	molecular function
core promoter binding	Hs	molecular function
intronic transcription regulatory region sequence-specific DNA binding	Hs	molecular function
neuron migration	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription factor complex	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
phospholipid metabolic process	Hs	biological process
multicellular organism development	Hs	biological process
pattern specification process	Hs	biological process
axon guidance	Hs	biological process
brain development	Hs	biological process
endoderm development	Hs	biological process
locomotory behavior	Hs	biological process
response to hormone	Hs	biological process
animal organ morphogenesis	Hs	biological process
positive regulation of gene expression	Hs	biological process
negative regulation of epithelial to mesenchymal transition	Hs	biological process
enzyme binding	Hs	molecular function
telencephalon development	Hs	biological process
forebrain dorsal/ventral pattern formation	Hs	biological process
forebrain neuron differentiation	Hs	biological process
cerebral cortex neuron differentiation	Hs	biological process
pituitary gland development	Hs	biological process
telencephalon cell migration	Hs	biological process
lung development	Hs	biological process
negative regulation of cell migration	Hs	biological process
negative regulation of transforming growth factor beta receptor signaling pathway	Hs	biological process
thyroid gland development	Hs	biological process
forebrain development	Hs	biological process
positive regulation of circadian rhythm	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function
intronic transcription regulatory region DNA binding	Hs	molecular function
negative regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
rhythmic process	Hs	biological process
anatomical structure formation involved in morphogenesis	Hs	biological process
neuron fate commitment	Hs	biological process
oligodendrocyte differentiation	Hs	biological process

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	184	2.26e-53
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	184	2.26e-53
core promoter proximal region sequence-specific DNA binding	Hs	molecular function	119	2.24e-30
RNA polymerase II regulatory region DNA binding	Hs	molecular function	184	2.26e-53
core promoter binding	Hs	molecular function	184	2.26e-53
intronic transcription regulatory region sequence-specific DNA binding	Hs	molecular function	184	2.26e-53
DNA binding	Hs	molecular function	184	2.26e-53
chromatin binding	Hs	molecular function	119	2.24e-30
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	184	2.26e-53
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	184	2.26e-53
transcription coactivator activity	Hs	molecular function	119	2.24e-30
protein binding	Hs	molecular function	184	2.26e-53
intracellular	Hs	cellular component	119	2.24e-30
nucleus	Hs	cellular component	184	2.26e-53
nucleoplasm	Hs	cellular component	184	2.26e-53
transcription factor complex	Hs	cellular component	184	2.26e-53
transcription factor binding	Hs	molecular function	119	2.24e-30
enzyme binding	Hs	molecular function	184	2.26e-53
sequence-specific DNA binding	Hs	molecular function	184	2.26e-53
transcription regulatory region DNA binding	Hs	molecular function	184	2.26e-53
intronic transcription regulatory region DNA binding	Hs	molecular function	184	2.26e-53

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	1.7E-23
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gene collection 1 (N. Satoh)

ciad042d09

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)