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Gene Card

Best human hits

H2AFJ; H2AFX; HIST2H2AC

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001575

Gene Model ID

KH2012:KH.C10.360

Location

KhC10:1417473..1418671

Transcript Models and Sequences

  KH2012:KH.C10.360.v1.A.nonSL10-1
KH2012:KH.C10.360.v1.A.nonSL11-1
KH2012:KH.C10.360.v1.A.nonSL13-1
KH2012:KH.C10.360.v1.A.nonSL14-1
KH2012:KH.C10.360.v1.A.nonSL3-1
KH2012:KH.C10.360.v1.A.nonSL4-1
KH2012:KH.C10.360.v1.A.nonSL5-1
KH2012:KH.C10.360.v1.A.nonSL6-1
KH2012:KH.C10.360.v1.A.nonSL7-1
KH2012:KH.C10.360.v1.A.nonSL8-1
KH2012:KH.C10.360.v1.A.nonSL9-1
KH2012:KH.C10.360.v1.A.SL2-1
KH2012:KH.C10.360.v2.A.SL1-1
KH2012:KH.C10.360.v3.A.SL12-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000010029
NCBI Reference Sequence XM_002129833.4
NCBI Reference Sequence XM_009861578.2
NCBI Reference Sequence XM_009861579.2
Collections

Gateway full ORF

2 results

cien68269

Plate: VES80_I22

cien129052

Plate: VES90_E12

Gene collection 1 (N. Satoh)

1 result

cicl055h13

Plate: R1CiGC14h19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Histone-fold Gene3D Histone-fold
Histone_H2A_C Pfam Histone H2A, C-terminal domain
Histone_H2A CDD Histone H2A
Histone_H2A_CS ProSitePatterns Histone H2A conserved site
Histone_H2A SMART Histone H2A
Histone_H2A PRINTS Histone H2A
Histone_H2A/H2B/H3 Pfam Histone H2A/H2B/H3
Histone-fold SUPERFAMILY Histone-fold

GOSlim

13 results

GO Term Annotation Origin Type
DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
centrosome Blast cellular component
nuclear speck Blast cellular component
enzyme binding Blast molecular function
protein heterodimerization activity Blast molecular function
extracellular exosome Blast cellular component
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
macromolecular complex Blast cellular component
nuclear lumen Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromosome, telomeric region Hs cellular component 207 2.31e-70
chromatin Hs cellular component 207 2.31e-70
nucleosome Hs cellular component 207 2.31e-70
nuclear chromatin Hs cellular component 207 2.31e-70
condensed nuclear chromosome Hs cellular component 207 2.31e-70
male germ cell nucleus Hs cellular component 207 2.31e-70
XY body Hs cellular component 207 2.31e-70
DNA binding Hs molecular function 207 2.31e-70
damaged DNA binding Hs molecular function 207 2.31e-70
protein binding Hs molecular function 207 2.31e-70
nucleus Hs cellular component 207 2.31e-70
nucleoplasm Hs cellular component 207 2.31e-70
replication fork Hs cellular component 207 2.31e-70
chromosome Hs cellular component 207 2.31e-70
centrosome Hs cellular component 207 2.31e-70
nuclear speck Hs cellular component 207 2.31e-70
enzyme binding Hs molecular function 207 2.31e-70
site of double-strand break Hs cellular component 207 2.31e-70
histone binding Hs molecular function 207 2.31e-70
protein heterodimerization activity Hs molecular function 207 2.31e-70
extracellular exosome Hs cellular component 207 2.31e-70

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleosome CDD cellular component 3.16573E-62
DNA binding CDD molecular function 3.16573E-62
nucleus CDD cellular component 3.16573E-62
protein heterodimerization activity Gene3D molecular function 1.5E-62

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