Aniseed - Gene card

Gene Card

Best human hits

GAR1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001580

Gene Model ID

KH2012:KH.C10.365

Location

KhC10:1394352..1395668

Transcript Models and Sequences

KH2012:KH.C10.365.v1.A.ND1-1
KH2012:KH.C10.365.v1.A.nonSL2-1
KH2012:KH.C10.365.v1.A.SL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005744
NCBI Reference Sequence	XM_002130294.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb2b1

Plate: R1CiGC28p01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Transl_B-barrel_sf	SUPERFAMILY	Translation protein, beta-barrel domain superfamily
Gar1/Naf1_Cbf5-bd_sf	Gene3D	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain
H/ACA_rnp_Gar1	ProDom	H/ACA ribonucleoprotein complex, subunit Gar1
H/ACA_rnp_Gar1	PANTHER	H/ACA ribonucleoprotein complex, subunit Gar1
H/ACA_rnp_Gar1/Naf1	Pfam	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1

GOSlim

15 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
RNA metabolic process	Orthology	biological process
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organelle organization	Orthology	biological process
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
DNA metabolic process	Orthology	biological process
nuclear body	Orthology	cellular component

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
snoRNA guided rRNA pseudouridine synthesis	Hs	biological process
nuclear chromosome, telomeric region	Hs	cellular component
pseudouridine synthesis	Hs	biological process
fibrillar center	Hs	cellular component
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
telomerase holoenzyme complex	Hs	cellular component
nucleolus	Hs	cellular component
rRNA processing	Hs	biological process
telomere maintenance via telomerase	Hs	biological process
Cajal body	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
rRNA pseudouridine synthesis	Hs	biological process
box H/ACA snoRNP complex	Hs	cellular component
box H/ACA snoRNA binding	Hs	molecular function
ribosome biogenesis	Hs	biological process
telomerase RNA binding	Hs	molecular function
box H/ACA scaRNP complex	Hs	cellular component
box H/ACA telomerase RNP complex	Hs	cellular component

GO (Blast)