Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 

Gene Card

Best human hits

NCOR1; NCOR2; RCOR3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001791

Gene Model ID

KH2012:KH.C10.560

Location

KhC10:2104362..2115418

Transcript Models and Sequences

  KH2012:KH.C10.560.v1.B.nonSL2-1
KH2012:KH.C10.560.v1.B.nonSL3-1
KH2012:KH.C10.560.v1.B.nonSL5-1
KH2012:KH.C10.560.v1.B.SL4-1
KH2012:KH.C10.560.v1.R.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000008210
Collections

Gateway full ORF

1 result

cien228983

Plate: VES105_N13

Gene collection 1 (N. Satoh)

3 results

cieg002l01

Plate: R1CiGC15b10

cieg007e22

Plate: R1CiGC16f07

ciad058j10

Plate: R1CiGC06c15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
SANT_dom ProSiteProfiles SANT domain
N-CoR_GPS2_interact Pfam N-CoR, GPS2-interacting domain
SANT/Myb CDD SANT/Myb domain
SANT/Myb SMART SANT/Myb domain
SANT/Myb Pfam SANT/Myb domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily

GOSlim

36 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
RNA polymerase II regulatory region DNA binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription factor binding Orthology molecular function
membrane Orthology cellular component
nuclear body Orthology cellular component
transcription regulatory region DNA binding Orthology molecular function
protein N-terminus binding Orthology molecular function
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
receptor binding Orthology molecular function
microtubule Orthology cellular component
organelle organization Orthology biological process
organic substance metabolic process Orthology biological process
response to lipid Orthology biological process
enzyme binding Orthology molecular function
intracellular signal transduction Orthology biological process
cellular response to stress Orthology biological process
negative regulation of signal transduction Orthology biological process
protein phosphorylation Orthology biological process
microtubule-based process Orthology biological process
intracellular part Blast cellular component

GO (Orthology)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
histone deacetylase complex Hs cellular component
negative regulation of transcription from RNA polymerase II promoter Hs biological process
chromatin Hs cellular component
nuclear chromatin Hs cellular component
RNA polymerase II regulatory region DNA binding Hs molecular function
RNA polymerase II activating transcription factor binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription corepressor activity Hs molecular function
Notch binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytosol Hs cellular component
spindle microtubule Hs cellular component
chromatin organization Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
circadian rhythm Hs biological process
transcription factor binding Hs molecular function
membrane Hs cellular component
nuclear matrix Hs cellular component
Sin3 complex Hs cellular component
nuclear body Hs cellular component
ligand-dependent nuclear receptor binding Hs molecular function
transcriptional repressor complex Hs cellular component
regulation of lipid metabolic process Hs biological process
response to estradiol Hs biological process
nuclear hormone receptor binding Hs molecular function
glucocorticoid receptor binding Hs molecular function
histone deacetylase binding Hs molecular function
retinoic acid receptor binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
negative regulation of JNK cascade Hs biological process
retinoid X receptor binding Hs molecular function
thyroid hormone receptor binding Hs molecular function
protein N-terminus binding Hs molecular function
spindle assembly Hs biological process

GO (Blast)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
histone deacetylase complex Hs cellular component 390 9.32e-117
chromatin Hs cellular component 390 9.32e-117
nuclear chromatin Hs cellular component 390 9.32e-117
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 55.8 6.58e-08
RNA polymerase II regulatory region DNA binding Hs molecular function 390 9.32e-117
RNA polymerase II activating transcription factor binding Hs molecular function 387 9.64e-116
DNA binding Hs molecular function 390 9.32e-117
chromatin binding Hs molecular function 390 9.32e-117
transcription factor activity, sequence-specific DNA binding Hs molecular function 55.8 6.58e-08
transcription corepressor activity Hs molecular function 390 9.32e-117
Notch binding Hs molecular function 390 9.32e-117
protein binding Hs molecular function 390 9.32e-117
nucleus Hs cellular component 390 9.32e-117
nucleoplasm Hs cellular component 390 9.32e-117
transcription factor complex Hs cellular component 55.8 6.58e-08
cytosol Hs cellular component 387 9.64e-116
spindle microtubule Hs cellular component 387 9.64e-116
transcription factor binding Hs molecular function 390 9.32e-117
membrane Hs cellular component 390 9.32e-117
nuclear matrix Hs cellular component 390 9.32e-117
Sin3 complex Hs cellular component 387 9.64e-116
nuclear body Hs cellular component 390 9.32e-117
ligand-dependent nuclear receptor binding Hs molecular function 390 9.32e-117
transcriptional repressor complex Hs cellular component 390 9.32e-117
nuclear hormone receptor binding Hs molecular function 387 9.64e-116
glucocorticoid receptor binding Hs molecular function 390 9.32e-117
histone deacetylase binding Hs molecular function 390 9.32e-117
retinoic acid receptor binding Hs molecular function 390 9.32e-117
transcription regulatory region DNA binding Hs molecular function 387 9.64e-116
retinoid X receptor binding Hs molecular function 390 9.32e-117
thyroid hormone receptor binding Hs molecular function 387 9.64e-116
protein N-terminus binding Hs molecular function 390 9.32e-117

GO (InterProScan)

1 result

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 1.4E-12

Back to Top