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Gene Card

Best human hits

RBX1; RLIM; RNF7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001867

Gene Model ID

KH2012:KH.C10.66

Location

KhC10:3954493..3955852

Transcript Models and Sequences

  KH2012:KH.C10.66.v1.A.ND3-1
KH2012:KH.C10.66.v1.A.nonSL4-1
KH2012:KH.C10.66.v1.A.nonSL5-1
KH2012:KH.C10.66.v1.A.nonSL6-1
KH2012:KH.C10.66.v1.A.nonSL7-1
KH2012:KH.C10.66.v1.A.SL1-1
KH2012:KH.C10.66.v1.A.SL2-1
KH2012:KH.C10.66.v1.A.SL8-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000022721
Collections

Gateway full ORF

2 results

cien56069

Plate: VES79_L03

cima8110330

Plate: VES73_M21

Gene collection 1 (N. Satoh)

1 result

citb010m18

Plate: R1CiGC30m11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Znf_RING ProSiteProfiles Zinc finger, RING-type
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
Znf_RING_H2 Pfam Zinc finger, RING-H2-type

GOSlim

34 results

GO Term Annotation Origin Type
protein polyubiquitination Orthology biological process
transcription corepressor activity Blast molecular function
ubiquitin-protein transferase activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
DNA repair Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
transcription factor binding Orthology molecular function
zinc ion binding Orthology molecular function
protein ubiquitination Orthology biological process
transferase activity Orthology molecular function
ubiquitin protein ligase binding Orthology molecular function
metal ion binding Orthology molecular function
negative regulation of canonical Wnt signaling pathway Orthology biological process
intracellular signal transduction Orthology biological process
protein phosphorylation Orthology biological process
organelle organization Orthology biological process
G2/M transition of mitotic cell cycle Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cell-cell signaling Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
ubiquitin-like protein transferase activity Orthology molecular function
protein metabolic process Orthology biological process
cytoplasmic part Orthology cellular component
proteolysis Orthology biological process
nuclear part Orthology cellular component
cellular protein modification process Orthology biological process
protein modification by small protein conjugation Orthology biological process
cytokine-mediated signaling pathway Orthology biological process
transition metal ion binding Blast molecular function

GO (Orthology)

49 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
MAPK cascade Hs biological process
protein polyubiquitination Hs biological process
nucleotide-excision repair, DNA damage recognition Hs biological process
ubiquitin-protein transferase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
DNA repair Hs biological process
transcription-coupled nucleotide-excision repair Hs biological process
nucleotide-excision repair, DNA incision, 3'-to lesion Hs biological process
nucleotide-excision repair, DNA incision, 5'-to lesion Hs biological process
protein monoubiquitination Hs biological process
cellular response to DNA damage stimulus Hs biological process
transcription factor binding Hs molecular function
zinc ion binding Hs molecular function
SCF complex assembly Hs biological process
negative regulation of G2/M transition of mitotic cell cycle Hs biological process
viral process Hs biological process
Wnt signaling pathway Hs biological process
protein ubiquitination Hs biological process
transferase activity Hs molecular function
SCF ubiquitin ligase complex Hs cellular component
NEDD8 transferase activity Hs molecular function
protein catabolic process Hs biological process
VCB complex Hs cellular component
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Hs biological process
cullin-RING ubiquitin ligase complex Hs cellular component
Cul2-RING ubiquitin ligase complex Hs cellular component
Cul3-RING ubiquitin ligase complex Hs cellular component
Cul4A-RING E3 ubiquitin ligase complex Hs cellular component
Cul4B-RING E3 ubiquitin ligase complex Hs cellular component
Cul5-RING ubiquitin ligase complex Hs cellular component
Cul7-RING ubiquitin ligase complex Hs cellular component
ubiquitin protein ligase binding Hs molecular function
positive regulation of proteasomal ubiquitin-dependent protein catabolic process Hs biological process
nucleotide-excision repair, DNA incision Hs biological process
ubiquitin-ubiquitin ligase activity Hs molecular function
DNA damage response, detection of DNA damage Hs biological process
proteasome-mediated ubiquitin-dependent protein catabolic process Hs biological process
nuclear SCF ubiquitin ligase complex Hs cellular component
post-translational protein modification Hs biological process
protein neddylation Hs biological process
metal ion binding Hs molecular function
ubiquitin protein ligase activity Hs molecular function
interleukin-1-mediated signaling pathway Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process
cullin family protein binding Hs molecular function

GO (Blast)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription corepressor activity Hs molecular function 39.3 1.40e-04
ubiquitin-protein transferase activity Hs molecular function 198 9.70e-68
copper ion binding Hs molecular function 96.3 3.14e-27
protein binding Hs molecular function 198 9.70e-68
nucleus Hs cellular component 198 9.70e-68
nucleoplasm Hs cellular component 198 9.70e-68
anaphase-promoting complex Hs cellular component 96.3 3.14e-27
cytoplasm Hs cellular component 198 9.70e-68
cytosol Hs cellular component 198 9.70e-68
transcription factor binding Hs molecular function 198 9.70e-68
zinc ion binding Hs molecular function 198 9.70e-68
transferase activity Hs molecular function 198 9.70e-68
transcriptional repressor complex Hs cellular component 39.3 1.40e-04
SCF ubiquitin ligase complex Hs cellular component 198 9.70e-68
NEDD8 transferase activity Hs molecular function 198 9.70e-68
VCB complex Hs cellular component 198 9.70e-68
cullin-RING ubiquitin ligase complex Hs cellular component 198 9.70e-68
Cul2-RING ubiquitin ligase complex Hs cellular component 198 9.70e-68
Cul3-RING ubiquitin ligase complex Hs cellular component 198 9.70e-68
Cul4A-RING E3 ubiquitin ligase complex Hs cellular component 198 9.70e-68
Cul4B-RING E3 ubiquitin ligase complex Hs cellular component 198 9.70e-68
Cul5-RING ubiquitin ligase complex Hs cellular component 198 9.70e-68
Cul7-RING ubiquitin ligase complex Hs cellular component 198 9.70e-68
ubiquitin protein ligase binding Hs molecular function 198 9.70e-68
ubiquitin-ubiquitin ligase activity Hs molecular function 198 9.70e-68
nuclear SCF ubiquitin ligase complex Hs cellular component 198 9.70e-68
metal ion binding Hs molecular function 198 9.70e-68
ubiquitin protein ligase activity Hs molecular function 198 9.70e-68
Cul4-RING E3 ubiquitin ligase complex Hs cellular component 96.3 3.14e-27
cullin family protein binding Hs molecular function 198 9.70e-68

GO (InterProScan)

1 result

GO Term Analysis Type e-value
zinc ion binding Pfam molecular function 1.7E-25

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