Aniseed - Gene card

Gene Card

Best human hits

IPO13; XPO1; XPO5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001918

Gene Model ID

KH2012:KH.C11.112

Location

KhC11:2008697..2023026

Transcript Models and Sequences

KH2012:KH.C11.112.v1.A.SL2-1
KH2012:KH.C11.112.v2.A.SL2-1
KH2012:KH.C11.112.v3.A.nonSL10-1
KH2012:KH.C11.112.v3.A.nonSL11-1
KH2012:KH.C11.112.v3.A.nonSL13-1
KH2012:KH.C11.112.v3.A.nonSL3-1
KH2012:KH.C11.112.v3.A.nonSL4-1
KH2012:KH.C11.112.v3.A.nonSL5-1
KH2012:KH.C11.112.v3.A.nonSL6-1
KH2012:KH.C11.112.v3.A.nonSL7-1
KH2012:KH.C11.112.v3.A.nonSL8-1
KH2012:KH.C11.112.v3.A.nonSL9-1
KH2012:KH.C11.112.v3.A.SL12-1
KH2012:KH.C11.112.v3.R.ND1-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000024562
NCBI Reference Sequence	XM_002130394.4
NCBI Reference Sequence	XM_009861851.2
NCBI Reference Sequence	XM_009861853.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cicl028a11

Plate: R1CiGC11l12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
CRM1_C_dom	SMART	CRM1 C-terminal domain
Importin-beta_N	Pfam	Importin-beta, N-terminal domain
Exportin-1/Importin-b-like	Pfam	Exportin-1/Importin-beta-like
ARM-type_fold	SUPERFAMILY	Armadillo-type fold
Importin-beta_N	SMART	Importin-beta, N-terminal domain
Importin-beta_N	ProSiteProfiles	Importin-beta, N-terminal domain
CRM1_C_dom	Pfam	CRM1 C-terminal domain
ARM-like	Gene3D	Armadillo-like helical

GOSlim

32 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA binding	Orthology	molecular function
binding	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nuclear envelope	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
intracellular protein transport	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
nuclear membrane	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
intracellular transport	Orthology	biological process
nuclear outer membrane-endoplasmic reticulum membrane network	Orthology	cellular component
membrane region	Orthology	cellular component
organelle organization	Orthology	biological process
enzyme binding	Orthology	molecular function
microtubule-based process	Orthology	biological process
nuclear body	Orthology	cellular component
protein localization to organelle	Orthology	biological process
protein metabolic process	Orthology	biological process
mRNA catabolic process	Orthology	biological process
organic substance transport	Orthology	biological process
nucleoplasm part	Blast	cellular component
intracellular part	Blast	cellular component

GO (Orthology)

42 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal subunit export from nucleus	Hs	biological process
ribosomal large subunit export from nucleus	Hs	biological process
ribosomal small subunit export from nucleus	Hs	biological process
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
kinetochore	Hs	cellular component
RNA binding	Hs	molecular function
nuclear export signal receptor activity	Hs	molecular function
transporter activity	Hs	molecular function
binding	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nuclear envelope	Hs	cellular component
annulate lamellae	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
protein export from nucleus	Hs	biological process
intracellular protein transport	Hs	biological process
nucleocytoplasmic transport	Hs	biological process
sister chromatid cohesion	Hs	biological process
Ran GTPase binding	Hs	molecular function
protein transporter activity	Hs	molecular function
regulation of centrosome duplication	Hs	biological process
Cajal body	Hs	cellular component
protein transport	Hs	biological process
membrane	Hs	cellular component
viral process	Hs	biological process
protein domain specific binding	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
nuclear membrane	Hs	cellular component
macromolecular complex	Hs	cellular component
protein localization to nucleus	Hs	biological process
regulation of protein catabolic process	Hs	biological process
ribosome biogenesis	Hs	biological process
response to drug	Hs	biological process
intracellular membrane-bounded organelle	Hs	cellular component
regulation of mRNA stability	Hs	biological process
host cell	Hs	cellular component
regulation of protein export from nucleus	Hs	biological process
mRNA transport	Hs	biological process

GO (Blast)

31 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
tRNA binding	Hs	molecular function	62.8	1.15e-09
kinetochore	Hs	cellular component	1809	0.0
RNA binding	Hs	molecular function	1809	0.0
mRNA binding	Hs	molecular function	62.8	1.15e-09
nuclear export signal receptor activity	Hs	molecular function	1809	0.0
transporter activity	Hs	molecular function	1809	0.0
binding	Hs	molecular function	1809	0.0
protein binding	Hs	molecular function	1809	0.0
intracellular	Hs	cellular component	1809	0.0
nucleus	Hs	cellular component	1809	0.0
nuclear envelope	Hs	cellular component	1809	0.0
annulate lamellae	Hs	cellular component	1809	0.0
nucleoplasm	Hs	cellular component	1809	0.0
nucleolus	Hs	cellular component	1809	0.0
cytoplasm	Hs	cellular component	1809	0.0
cytosol	Hs	cellular component	1809	0.0
nuclear localization sequence binding	Hs	molecular function	57.8	3.71e-08
Ran GTPase binding	Hs	molecular function	1809	0.0
protein transporter activity	Hs	molecular function	1809	0.0
Cajal body	Hs	cellular component	1809	0.0
membrane	Hs	cellular component	1809	0.0
protein domain specific binding	Hs	molecular function	1809	0.0
intracellular ribonucleoprotein complex	Hs	cellular component	1809	0.0
nuclear membrane	Hs	cellular component	1809	0.0
macromolecular complex	Hs	cellular component	1809	0.0
micro-ribonucleoprotein complex	Hs	cellular component	62.8	1.15e-09
nuclear RNA export factor complex	Hs	cellular component	62.8	1.15e-09
RNA nuclear export complex	Hs	cellular component	62.8	1.15e-09
intracellular membrane-bounded organelle	Hs	cellular component	1809	0.0
host cell	Hs	cellular component	1809	0.0
pre-miRNA binding	Hs	molecular function	62.8	1.15e-09

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
binding	SUPERFAMILY	molecular function	9.75E-118
intracellular protein transport	Pfam	biological process	2.3E-12
Ran GTPase binding	Pfam	molecular function	2.3E-12