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GENE CARD

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Gene Card

Best human hits

BRD2; BRD4; CECR2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001925

Gene Model ID

KH2012:KH.C11.119

Location

KhC11:3107180..3119552

Transcript Models and Sequences

  KH2012:KH.C11.119.v1.B.ND1-1
KH2012:KH.C11.119.v2.B.SL2-2
KH2012:KH.C11.119.v3.B.SL2-3
KH2012:KH.C11.119.v4.B.SL3-1
KH2012:KH.C11.119.v5.B.SL3-3

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000021038
NCBI Reference Sequence XM_009862019.2
Collections

Gateway full ORF

2 results

cien91321

Plate: VES84_B15

cien162784

Plate: VES95_D12

Gene collection 1 (N. Satoh)

1 result

cieg073i20

Plate: R1CiGC40o21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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No Phylogeny Tree for this Gene.
Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Bromodomain ProSiteProfiles Bromodomain
Bromodomain-like_sf Gene3D Bromodomain-like superfamily
Bromodomain-like_sf SUPERFAMILY Bromodomain-like superfamily
Bromodomain PRINTS Bromodomain
Bromodomain SMART Bromodomain
Bromodomain Pfam Bromodomain

GOSlim

10 results

GO Term Annotation Origin Type
chromatin binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytosol Blast cellular component
nuclear speck Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
enzyme binding Blast molecular function
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
condensed nuclear chromosome Hs cellular component 58.9 2.28e-08
RNA polymerase II core binding Hs molecular function 58.9 2.28e-08
p53 binding Hs molecular function 58.9 2.28e-08
chromatin binding Hs molecular function 58.9 2.28e-08
protein binding Hs molecular function 237 2.32e-63
nucleus Hs cellular component 237 2.32e-63
nucleoplasm Hs cellular component 58.9 2.28e-08
chromosome Hs cellular component 58.9 2.28e-08
nuclear euchromatin Hs cellular component 237 2.32e-63
cytosol Hs cellular component 58.9 2.28e-08
nuclear speck Hs cellular component 55.5 1.93e-07
ISWI-type complex Hs cellular component 237 2.32e-63
lysine-acetylated histone binding Hs molecular function 58.9 2.28e-08
CERF complex Hs cellular component 237 2.32e-63

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Gene3D molecular function 4.1E-20

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