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Gene Card

Best human hits

PUF60; U2AF2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001955

Gene Model ID

KH2012:KH.C11.146

Location

KhC11:738766..742251

Transcript Models and Sequences

  KH2012:KH.C11.146.v1.A.ND2-1
KH2012:KH.C11.146.v1.A.SL1-1
KH2012:KH.C11.146.v1.A.SL3-1
KH2012:KH.C11.146.v1.A.SL4-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000003455
NCBI Reference Sequence XM_002130350.4
Collections

Gateway full ORF

2 results

cien39055

Plate: VES76_O12

cien126099

Plate: VES89_J24

Gene collection 1 (N. Satoh)

2 results

citb8l16

Plate: R1CiGC29j22

cilv004m23

Plate: R1CiGC25a04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
U2AF_lg TIGRFAM U2 snRNP auxilliary factor, large subunit, splicing factor
RRM_dom SMART RNA recognition motif domain
RRM_dom Pfam RNA recognition motif domain

GOSlim

24 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
DNA binding Blast molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
enzyme binding Orthology molecular function
cell junction Blast cellular component
identical protein binding Blast molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
protein ubiquitination Orthology biological process
positive regulation of gene expression Orthology biological process
negative regulation of gene expression Orthology biological process
cell adhesion molecule binding Blast molecular function

GO (Orthology)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
commitment complex Hs cellular component
mRNA splicing, via spliceosome Hs biological process
Prp19 complex Hs cellular component
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
poly-pyrimidine tract binding Hs molecular function
RNA splicing Hs biological process
nuclear speck Hs cellular component
enzyme binding Hs molecular function
pre-mRNA 3'-splice site binding Hs molecular function
mRNA 3'-end processing Hs biological process
negative regulation of protein ubiquitination Hs biological process
positive regulation of RNA splicing Hs biological process
negative regulation of mRNA splicing, via spliceosome Hs biological process
C2H2 zinc finger domain binding Hs molecular function
U2-type prespliceosome Hs cellular component
U2AF Hs cellular component

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
commitment complex Hs cellular component 532 0.0
Prp19 complex Hs cellular component 532 0.0
nucleic acid binding Hs molecular function 532 0.0
DNA binding Hs molecular function 71.2 4.31e-13
RNA binding Hs molecular function 532 0.0
protein binding Hs molecular function 532 0.0
nucleus Hs cellular component 532 0.0
nucleoplasm Hs cellular component 532 0.0
spliceosomal complex Hs cellular component 532 0.0
poly-pyrimidine tract binding Hs molecular function 532 0.0
nuclear speck Hs cellular component 532 0.0
enzyme binding Hs molecular function 532 0.0
cyclin-dependent protein kinase activating kinase holoenzyme complex Hs cellular component 71.2 4.31e-13
cell junction Hs cellular component 71.2 4.31e-13
intracellular ribonucleoprotein complex Hs cellular component 71.2 4.31e-13
pre-mRNA 3'-splice site binding Hs molecular function 532 0.0
identical protein binding Hs molecular function 71.2 4.31e-13
cadherin binding Hs molecular function 71.2 4.31e-13
C2H2 zinc finger domain binding Hs molecular function 532 0.0
U2-type prespliceosome Hs cellular component 532 0.0
U2AF Hs cellular component 532 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 6.11E-26
RNA binding TIGRFAM molecular function 4.6E-145
nucleus TIGRFAM cellular component 4.6E-145
mRNA processing TIGRFAM biological process 4.6E-145

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