Aniseed - Gene card

Gene Card

Best human hits

RPSA

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001957

Gene Model ID

KH2012:KH.C11.148

Location

KhC11:4605948..4607572

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000022358
NCBI Reference Sequence	XM_002126320.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cilv003j22

Plate: R1CiGC25i23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
Ribosomal_S2_CS	ProSitePatterns	Ribosomal protein S2, conserved site
Ribosomal_S2_euk/arc	PANTHER	Ribosomal protein S2, eukaryotic/archaeal
40S_SA_C	Pfam	40S ribosomal protein SA, C-terminal domain
Ribosomal_S2_flav_dom_sf	SUPERFAMILY	Ribosomal protein S2, flavodoxin-like domain superfamily
Ribosomal_S2_euk	Hamap	Ribosomal protein S2, eukaryotic
Ribosomal_S2	CDD	Ribosomal protein S2
Ribosomal_S2	Pfam	Ribosomal protein S2
Ribosomal_S2	PRINTS	Ribosomal protein S2
Ribosomal_S2_euk/arc	TIGRFAM	Ribosomal protein S2, eukaryotic/archaeal

GOSlim

23 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
plasma membrane	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
cell adhesion	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
binding	Orthology	molecular function
intracellular protein transport	Orthology	biological process
intracellular organelle part	Orthology	cellular component
nucleolus	Orthology	cellular component
macromolecular complex	Orthology	cellular component
macromolecular complex binding	Orthology	molecular function

GO (Orthology)

32 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal small subunit assembly	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Hs	biological process
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Hs	biological process
virus receptor activity	Hs	molecular function
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
laminin receptor activity	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
plasma membrane	Hs	cellular component
rRNA processing	Hs	biological process
rRNA export from nucleus	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
cell adhesion	Hs	biological process
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
viral process	Hs	biological process
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
90S preribosome	Hs	cellular component
ribosome binding	Hs	molecular function
laminin binding	Hs	molecular function
viral entry into host cell	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
virus receptor activity	Hs	molecular function	382	1.61e-134
RNA binding	Hs	molecular function	382	1.61e-134
structural constituent of ribosome	Hs	molecular function	382	1.61e-134
laminin receptor activity	Hs	molecular function	382	1.61e-134
protein binding	Hs	molecular function	382	1.61e-134
intracellular	Hs	cellular component	382	1.61e-134
nucleus	Hs	cellular component	382	1.61e-134
nucleoplasm	Hs	cellular component	382	1.61e-134
cytoplasm	Hs	cellular component	382	1.61e-134
cytosol	Hs	cellular component	382	1.61e-134
ribosome	Hs	cellular component	382	1.61e-134
plasma membrane	Hs	cellular component	382	1.61e-134
small ribosomal subunit	Hs	cellular component	382	1.61e-134
membrane	Hs	cellular component	382	1.61e-134
cytosolic small ribosomal subunit	Hs	cellular component	382	1.61e-134
intracellular ribonucleoprotein complex	Hs	cellular component	382	1.61e-134
90S preribosome	Hs	cellular component	382	1.61e-134
ribosome binding	Hs	molecular function	382	1.61e-134
laminin binding	Hs	molecular function	382	1.61e-134
extracellular exosome	Hs	cellular component	382	1.61e-134

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	3.4E-134
intracellular	CDD	cellular component	1.29849E-69
ribosome	CDD	cellular component	1.29849E-69
translation	PANTHER	biological process	3.4E-134
small ribosomal subunit	PANTHER	cellular component	3.4E-134

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cima893421

cima822399

Gene collection 1 (N. Satoh)

citb039n13

cilv003j22

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)