Gene Card
Best human hits
LARP6; LARP7; SSB
Unique Gene ID
Cirobu.g00002009
Gene Model ID
KH2012:KH.C11.196
Location
KhC11:698291..703988
Transcript Models and Sequences
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000024994 |
| NCBI Reference Sequence | XM_002129981.4 |
Gateway full ORF
2 results
cien102314
Plate: VES86_E06
cien85783
Plate: VES83_E20
Gene collection 1 (N. Satoh)
1 result
cilv008o13
Plate: R1CiGC25p09
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
6 results
| IPR Term | Analysis | Definition |
|---|---|---|
| La_HTH | ProSiteProfiles | La-type HTH domain |
| WH-like_DNA-bd_sf | Gene3D | Winged helix-like DNA-binding domain superfamily |
| WH_DNA-bd_sf | SUPERFAMILY | Winged helix DNA-binding domain superfamily |
| La_HTH | Pfam | La-type HTH domain |
| La_HTH | SMART | La-type HTH domain |
| Lupus_La | PRINTS | Lupus La protein |
GOSlim
12 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleic acid binding | Blast | molecular function |
| RNA binding | Blast | molecular function |
| protein binding | Blast | molecular function |
| nucleus | Blast | cellular component |
| nucleoplasm | Blast | cellular component |
| cytoplasm | Blast | cellular component |
| cytosol | Blast | cellular component |
| RNA processing | InterProScan | biological process |
| intracellular non-membrane-bounded organelle | Blast | cellular component |
| nuclear lumen | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
| cytoskeletal protein binding | Blast | molecular function |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
17 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| tRNA binding | Hs | molecular function | 48.5 | 5.72e-06 |
| nuclear chromosome, telomeric region | Hs | cellular component | 48.5 | 5.72e-06 |
| nucleic acid binding | Hs | molecular function | 114 | 5.14e-27 |
| RNA binding | Hs | molecular function | 114 | 5.14e-27 |
| mRNA binding | Hs | molecular function | 48.5 | 5.72e-06 |
| protein binding | Hs | molecular function | 114 | 5.14e-27 |
| nucleus | Hs | cellular component | 114 | 5.14e-27 |
| nucleoplasm | Hs | cellular component | 75.1 | 3.42e-14 |
| cytoplasm | Hs | cellular component | 114 | 5.14e-27 |
| cytosol | Hs | cellular component | 75.1 | 3.42e-14 |
| polysome | Hs | cellular component | 114 | 5.14e-27 |
| poly(U) RNA binding | Hs | molecular function | 48.5 | 5.72e-06 |
| myosin binding | Hs | molecular function | 114 | 5.14e-27 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 114 | 5.14e-27 |
| RNA stem-loop binding | Hs | molecular function | 114 | 5.14e-27 |
| mRNA 5'-UTR binding | Hs | molecular function | 114 | 5.14e-27 |
| sequence-specific mRNA binding | Hs | molecular function | 114 | 5.14e-27 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| RNA binding | PRINTS | molecular function | 6.4E-5 |
| nucleus | PRINTS | cellular component | 6.4E-5 |
| RNA processing | PRINTS | biological process | 6.4E-5 |
